Detailed information NTG0540301

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JWU58_RS08040
• Genome accession: NZ_CP070503
• Coordinates: 1754287..1756521 (+)
• Length: 744 a.a.
• NCBI ID: WP_206421731.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain SM1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1749287..1761521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JWU58_RS08015 (JWU58_08015)	-	1750313..1750972 (+)	660	WP_206421730.1	transglutaminase-like domain-containing protein	-
JWU58_RS08020 (JWU58_08020)	-	1751016..1751639 (+)	624	WP_123443610.1	glutathione S-transferase family protein	-
JWU58_RS08025 (JWU58_08025)	-	1751772..1752704 (+)	933	WP_016771010.1	ABC transporter ATP-binding protein	-
JWU58_RS08030 (JWU58_08030)	-	1752701..1753480 (+)	780	WP_056788203.1	ABC transporter permease	-
JWU58_RS08035 (JWU58_08035)	-	1753632..1754150 (-)	519	WP_016770668.1	DUF2062 domain-containing protein	-
JWU58_RS08040 (JWU58_08040)	comA	1754287..1756521 (+)	2235	WP_206421731.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JWU58_RS08045 (JWU58_08045)	exbB	1756623..1757258 (+)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JWU58_RS08050 (JWU58_08050)	-	1757255..1757683 (+)	429	WP_016771006.1	ExbD/TolR family protein	-
JWU58_RS08055 (JWU58_08055)	lpxK	1757683..1758693 (+)	1011	WP_016771005.1	tetraacyldisaccharide 4'-kinase	-
JWU58_RS08060 (JWU58_08060)	-	1758717..1758902 (+)	186	WP_003179363.1	Trm112 family protein	-
JWU58_RS08065 (JWU58_08065)	kdsB	1758899..1759663 (+)	765	WP_206421732.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JWU58_RS08070 (JWU58_08070)	-	1759663..1760127 (+)	465	WP_130927674.1	low molecular weight protein-tyrosine-phosphatase	-
JWU58_RS08075 (JWU58_08075)	murB	1760124..1761143 (+)	1020	WP_206421733.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81808.06 Da
• Isoelectric Point: 9.6771

>NTDB_id=540301 JWU58_RS08040 WP_206421731.1 1754287..1756521(+) (comA) [Pseudomonas atacamensis strain SM1]
MRTGMMALAVGLLAPVFLPALPPVGLLVVLPVVALMLLPFRSYPLACLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAWHWPAWIPAAIPLWALILGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMQGLKVHRVVSGDVPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIVANGERLLLTGDIDIRAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=540301 JWU58_RS08040 WP_206421731.1 1754287..1756521(+) (comA) [Pseudomonas atacamensis strain SM1]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGTAGTGCTGCCAGTGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCATGTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTGAATGACCGCTTGCCACCGAGTTTGGACGGCGAAACCCGTTGGCTTGAAGGG
CGTGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGTTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCGTCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCACAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCATGGTTGCCGTGGGCGTGCGGCCTGGCCTTCACGGC
GGCGCTGGGTTACGGCCTGCTCGCCGGTTTCGATGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCATCTTGGTGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGTTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCAATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCGATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCTGGCACTGGCCGGCGTGGATACCTGCCGCCATTCCACTCTGGGCGTTGATCCTGGGCA
GCCTGGGCGCGATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGATGTTGGCCAGGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACCTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCT
CGGGCGGTAATGCAGGGATTGAAGGTGCACCGCGTGGTCAGCGGCGATGTGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAGTGGCAGTGGGATGGCGTGCAGTTCCAGCTTTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTATTGCAGATCGTGGCCAACGGTGAACGCCTGCTGCTCACCGGCGATATCGACATTCGCGCCGAG
CGCGTTCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGCCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.17	96.64	0.601
comA	Ralstonia pseudosolanacearum GMI1000	34.816	100	0.368