Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JWU58_RS08045 Genome accession   NZ_CP070503
Coordinates   1756623..1757258 (+) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain SM1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1751623..1762258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWU58_RS08025 (JWU58_08025) - 1751772..1752704 (+) 933 WP_016771010.1 ABC transporter ATP-binding protein -
  JWU58_RS08030 (JWU58_08030) - 1752701..1753480 (+) 780 WP_056788203.1 ABC transporter permease -
  JWU58_RS08035 (JWU58_08035) - 1753632..1754150 (-) 519 WP_016770668.1 DUF2062 domain-containing protein -
  JWU58_RS08040 (JWU58_08040) comA 1754287..1756521 (+) 2235 WP_206421731.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JWU58_RS08045 (JWU58_08045) exbB 1756623..1757258 (+) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JWU58_RS08050 (JWU58_08050) - 1757255..1757683 (+) 429 WP_016771006.1 ExbD/TolR family protein -
  JWU58_RS08055 (JWU58_08055) lpxK 1757683..1758693 (+) 1011 WP_016771005.1 tetraacyldisaccharide 4'-kinase -
  JWU58_RS08060 (JWU58_08060) - 1758717..1758902 (+) 186 WP_003179363.1 Trm112 family protein -
  JWU58_RS08065 (JWU58_08065) kdsB 1758899..1759663 (+) 765 WP_206421732.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JWU58_RS08070 (JWU58_08070) - 1759663..1760127 (+) 465 WP_130927674.1 low molecular weight protein-tyrosine-phosphatase -
  JWU58_RS08075 (JWU58_08075) murB 1760124..1761143 (+) 1020 WP_206421733.1 UDP-N-acetylmuramate dehydrogenase -
  JWU58_RS08080 (JWU58_08080) - 1761443..1761913 (+) 471 WP_016771000.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=540302 JWU58_RS08045 WP_016771007.1 1756623..1757258(+) (exbB) [Pseudomonas atacamensis strain SM1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=540302 JWU58_RS08045 WP_016771007.1 1756623..1757258(+) (exbB) [Pseudomonas atacamensis strain SM1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCACTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCAGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858