Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JSQ81_RS13945 Genome accession   NZ_CP070502
Coordinates   2684198..2684674 (+) Length   158 a.a.
NCBI ID   WP_212607672.1    Uniprot ID   A0A975KUI6
Organism   Sporosarcina sp. Marseille-Q4063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2679198..2689674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS13935 (JSQ81_13935) - 2682051..2683340 (+) 1290 WP_212604625.1 RecT family recombinase -
  JSQ81_RS13940 (JSQ81_13940) - 2683343..2684128 (+) 786 WP_212604626.1 hypothetical protein -
  JSQ81_RS13945 (JSQ81_13945) ssbA 2684198..2684674 (+) 477 WP_212607672.1 single-stranded DNA-binding protein Machinery gene
  JSQ81_RS13950 (JSQ81_13950) - 2684755..2685459 (+) 705 WP_212604627.1 PD-(D/E)XK nuclease family protein -
  JSQ81_RS13955 (JSQ81_13955) - 2685750..2686103 (-) 354 WP_212604628.1 hypothetical protein -
  JSQ81_RS13960 (JSQ81_13960) - 2686119..2686319 (-) 201 WP_212604629.1 hypothetical protein -
  JSQ81_RS13965 (JSQ81_13965) - 2686593..2686961 (+) 369 WP_212604630.1 hypothetical protein -
  JSQ81_RS13970 (JSQ81_13970) - 2687022..2688029 (+) 1008 WP_212604631.1 type II TA system antitoxin MqsA family protein -
  JSQ81_RS13975 (JSQ81_13975) - 2688079..2688243 (-) 165 WP_212604632.1 hypothetical protein -
  JSQ81_RS13980 (JSQ81_13980) - 2688334..2688696 (+) 363 WP_212604633.1 hypothetical protein -
  JSQ81_RS13985 (JSQ81_13985) - 2689336..2689584 (+) 249 WP_212604634.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17355.16 Da        Isoelectric Point: 6.9793

>NTDB_id=540271 JSQ81_RS13945 WP_212607672.1 2684198..2684674(+) (ssbA) [Sporosarcina sp. Marseille-Q4063]
MMNNVSLVGRLTKEPTLKFTQSGVAVCNFTLAVNRPFKNANGENEADFIMVQVWRKPAENAANFLKKGSQAAVSGRINSR
HYENDKGDRIYVTEVVADFVQFLDPKPQGQGNQQQQGQGSYQKQPNPYAGNSNTQNQNGNQFETGGGPIAVSDDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=540271 JSQ81_RS13945 WP_212607672.1 2684198..2684674(+) (ssbA) [Sporosarcina sp. Marseille-Q4063]
ATTATGAATAACGTTAGCCTAGTAGGACGTTTAACAAAAGAACCAACACTTAAATTTACACAAAGTGGTGTTGCTGTTTG
TAACTTTACATTGGCTGTGAATCGTCCATTTAAAAATGCTAATGGTGAAAATGAAGCGGATTTCATCATGGTACAGGTTT
GGAGGAAGCCTGCCGAAAATGCGGCAAACTTCCTTAAAAAAGGTAGTCAGGCCGCTGTGAGTGGAAGAATCAATAGTCGT
CATTATGAAAATGATAAAGGGGATCGAATATATGTTACAGAGGTTGTAGCTGACTTTGTACAGTTCTTGGACCCGAAACC
ACAAGGTCAAGGCAATCAACAACAGCAAGGACAGGGTAGCTACCAGAAACAACCGAATCCGTATGCTGGCAACAGTAACA
CTCAAAATCAAAATGGTAATCAATTTGAAACGGGTGGAGGTCCTATTGCGGTAAGCGATGATGACCTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.163

100

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

49.425

100

0.544
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.259

68.354

0.405