Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JSQ81_RS10020 Genome accession   NZ_CP070502
Coordinates   1950833..1951783 (-) Length   316 a.a.
NCBI ID   WP_212607456.1    Uniprot ID   A0A975QC31
Organism   Sporosarcina sp. Marseille-Q4063     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945833..1956783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS09995 (JSQ81_09995) - 1945909..1947135 (-) 1227 WP_305849487.1 MFS transporter -
  JSQ81_RS10000 (JSQ81_10000) zupT 1947196..1948005 (-) 810 WP_212607454.1 zinc transporter ZupT -
  JSQ81_RS10005 (JSQ81_10005) - 1948154..1949110 (-) 957 WP_212607620.1 siderophore ABC transporter substrate-binding protein -
  JSQ81_RS10010 (JSQ81_10010) - 1949132..1949893 (-) 762 WP_172370659.1 ABC transporter ATP-binding protein -
  JSQ81_RS10015 (JSQ81_10015) - 1949890..1950840 (-) 951 WP_212607455.1 iron chelate uptake ABC transporter family permease subunit -
  JSQ81_RS10020 (JSQ81_10020) ceuB 1950833..1951783 (-) 951 WP_212607456.1 ABC transporter permease Machinery gene
  JSQ81_RS10025 (JSQ81_10025) - 1952067..1953785 (+) 1719 WP_212607457.1 ABC transporter ATP-binding protein -
  JSQ81_RS10030 (JSQ81_10030) hflX 1953886..1955157 (-) 1272 WP_212607458.1 GTPase HflX -
  JSQ81_RS10035 (JSQ81_10035) - 1955245..1955943 (-) 699 WP_212607459.1 VOC family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34825.18 Da        Isoelectric Point: 10.2921

>NTDB_id=540262 JSQ81_RS10020 WP_212607456.1 1950833..1951783(-) (ceuB) [Sporosarcina sp. Marseille-Q4063]
MKKRYLIIALIGLSFLSLFVGVSHITPMSLLDFKSEETEIFLISRMPRLVAIILAGAGMSISGLIMQQLSRNKFVSPTTA
GTLDATKLGILVSMLLFANASTIEKMIVAFAFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGSILSSVTTFLAYRANVI
QNMSAWLQGDFSMIMKGRFELLYISIPVIIIAYLYANRFTVAGMGEDFSRNLGLAYRRVVNIGLILVALITTTVVLTVGM
IPFLGLIIPNIISIFKGDHLQKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKSYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=540262 JSQ81_RS10020 WP_212607456.1 1950833..1951783(-) (ceuB) [Sporosarcina sp. Marseille-Q4063]
ATGAAGAAACGTTATTTGATAATCGCATTAATAGGCCTTTCCTTCCTTTCGTTGTTTGTAGGAGTCAGCCATATTACCCC
GATGAGTTTACTAGATTTCAAATCGGAAGAAACGGAAATATTTTTGATTAGCCGCATGCCAAGACTCGTTGCAATCATTC
TAGCAGGTGCTGGTATGAGTATTTCGGGACTAATTATGCAACAGCTAAGCAGAAATAAATTTGTCTCGCCGACAACCGCT
GGTACGCTCGATGCAACAAAGCTTGGAATTCTTGTTTCAATGCTTTTGTTCGCGAACGCATCAACAATTGAAAAGATGAT
CGTCGCATTTGCATTCGCGCTTGCCGGCACGCTCTTGTTTATGCAAATTCTTGATCGGATAAAGTTCAAGGACGCGATTT
TCATACCACTAGTCGGACTTATGTTCGGGAGCATACTGTCATCTGTAACAACGTTTTTAGCCTATCGGGCAAACGTTATA
CAAAATATGTCAGCATGGTTGCAAGGCGATTTTTCGATGATTATGAAAGGACGTTTTGAACTTCTCTACATAAGTATCCC
CGTTATTATAATTGCGTATCTGTACGCAAATCGATTTACGGTGGCTGGCATGGGAGAAGATTTCTCTAGAAACCTCGGTC
TTGCCTATCGGCGAGTCGTAAATATCGGTCTTATACTTGTTGCGCTCATTACGACAACTGTTGTTTTAACAGTCGGGATG
ATTCCATTTCTAGGTTTAATTATCCCGAATATCATTTCAATCTTTAAAGGCGATCACTTGCAAAAGACTTTGCCGCATAC
TGCGCTGCTAGGCGCGATATTTCTTCTCATTTGCGATATTTTGGGTCGAGTGCTCATTTATCCTTATGAAATATCAATTA
GTTTAATGGTAGGCGTCATTGGAAGCGGAATATTCCTCTACTTGCTGTTTAGGAGGAAATCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513