Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JSQ81_RS07640 | Genome accession | NZ_CP070502 |
| Coordinates | 1493963..1494436 (-) | Length | 157 a.a. |
| NCBI ID | WP_212607063.1 | Uniprot ID | A0A975QBP7 |
| Organism | Sporosarcina sp. Marseille-Q4063 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1493963..1532988 | 1493963..1494436 | within | 0 |
Gene organization within MGE regions
Location: 1493963..1532988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ81_RS07640 (JSQ81_07640) | ssbA | 1493963..1494436 (-) | 474 | WP_212607063.1 | single-stranded DNA-binding protein | Machinery gene |
| JSQ81_RS07645 (JSQ81_07645) | - | 1494509..1495294 (-) | 786 | WP_212607064.1 | hypothetical protein | - |
| JSQ81_RS07650 (JSQ81_07650) | - | 1495297..1496589 (-) | 1293 | WP_212607065.1 | RecT family recombinase | - |
| JSQ81_RS07655 (JSQ81_07655) | - | 1497248..1498162 (-) | 915 | WP_212607066.1 | HNH endonuclease | - |
| JSQ81_RS07660 (JSQ81_07660) | - | 1498238..1498975 (-) | 738 | WP_212607067.1 | hypothetical protein | - |
| JSQ81_RS07665 (JSQ81_07665) | - | 1499042..1499863 (-) | 822 | WP_249336672.1 | S1 RNA-binding domain-containing protein | - |
| JSQ81_RS07670 (JSQ81_07670) | - | 1499926..1501605 (-) | 1680 | WP_249336673.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JSQ81_RS07675 (JSQ81_07675) | - | 1501627..1502040 (-) | 414 | WP_212607069.1 | hypothetical protein | - |
| JSQ81_RS07680 (JSQ81_07680) | - | 1502198..1503382 (-) | 1185 | WP_212607070.1 | DUF6575 domain-containing protein | - |
| JSQ81_RS07685 (JSQ81_07685) | - | 1503389..1503787 (-) | 399 | WP_212607071.1 | hypothetical protein | - |
| JSQ81_RS07690 (JSQ81_07690) | - | 1503922..1504359 (-) | 438 | WP_212607072.1 | hypothetical protein | - |
| JSQ81_RS07695 (JSQ81_07695) | - | 1504422..1504628 (-) | 207 | WP_212607073.1 | hypothetical protein | - |
| JSQ81_RS07700 (JSQ81_07700) | - | 1504708..1505757 (-) | 1050 | WP_212607074.1 | replication-relaxation family protein | - |
| JSQ81_RS07705 (JSQ81_07705) | - | 1506036..1506737 (-) | 702 | WP_212607075.1 | hypothetical protein | - |
| JSQ81_RS07710 (JSQ81_07710) | - | 1507021..1508046 (-) | 1026 | WP_212607076.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| JSQ81_RS07715 (JSQ81_07715) | - | 1508101..1508838 (-) | 738 | WP_212607077.1 | hypothetical protein | - |
| JSQ81_RS07720 (JSQ81_07720) | - | 1508892..1511417 (-) | 2526 | WP_371812524.1 | CD3337/EF1877 family mobilome membrane protein | - |
| JSQ81_RS07725 (JSQ81_07725) | - | 1511478..1512023 (-) | 546 | WP_212607079.1 | hypothetical protein | - |
| JSQ81_RS07730 (JSQ81_07730) | - | 1512056..1514644 (-) | 2589 | WP_212607080.1 | ATP-binding protein | - |
| JSQ81_RS07735 (JSQ81_07735) | - | 1514841..1515527 (-) | 687 | WP_212607081.1 | TcpE family conjugal transfer membrane protein | - |
| JSQ81_RS07740 (JSQ81_07740) | - | 1515637..1515858 (-) | 222 | WP_099670960.1 | hypothetical protein | - |
| JSQ81_RS07745 (JSQ81_07745) | - | 1515950..1517098 (-) | 1149 | WP_212607082.1 | conjugal transfer protein | - |
| JSQ81_RS07750 (JSQ81_07750) | - | 1517149..1517370 (-) | 222 | WP_212607083.1 | hypothetical protein | - |
| JSQ81_RS07755 (JSQ81_07755) | - | 1517434..1518129 (-) | 696 | WP_212607084.1 | hypothetical protein | - |
| JSQ81_RS07760 (JSQ81_07760) | - | 1518148..1518591 (-) | 444 | WP_212607085.1 | DUF5348 domain-containing protein | - |
| JSQ81_RS07765 (JSQ81_07765) | - | 1518609..1518983 (-) | 375 | WP_212604604.1 | hypothetical protein | - |
| JSQ81_RS07770 (JSQ81_07770) | - | 1519002..1519370 (-) | 369 | WP_212607086.1 | hypothetical protein | - |
| JSQ81_RS07775 (JSQ81_07775) | - | 1519372..1520433 (-) | 1062 | WP_212607087.1 | ParM/StbA family protein | - |
| JSQ81_RS07780 (JSQ81_07780) | - | 1520453..1520905 (-) | 453 | WP_212607088.1 | metal-dependent hydrolase | - |
| JSQ81_RS07785 (JSQ81_07785) | - | 1522104..1522751 (-) | 648 | WP_212607089.1 | helix-turn-helix domain-containing protein | - |
| JSQ81_RS07790 (JSQ81_07790) | - | 1522753..1524969 (-) | 2217 | WP_212607090.1 | ATP-dependent RecD-like DNA helicase | - |
| JSQ81_RS07795 (JSQ81_07795) | - | 1524966..1525895 (-) | 930 | WP_212607091.1 | transcription termination/antitermination NusG family protein | - |
| JSQ81_RS07800 (JSQ81_07800) | - | 1525975..1526295 (-) | 321 | WP_212607092.1 | DUF771 domain-containing protein | - |
| JSQ81_RS07805 (JSQ81_07805) | - | 1526353..1526553 (-) | 201 | WP_212607093.1 | helix-turn-helix domain-containing protein | - |
| JSQ81_RS07810 (JSQ81_07810) | - | 1526727..1527080 (+) | 354 | WP_212607094.1 | helix-turn-helix domain-containing protein | - |
| JSQ81_RS07815 (JSQ81_07815) | - | 1527202..1527705 (+) | 504 | WP_212607095.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JSQ81_RS07820 (JSQ81_07820) | - | 1527733..1528845 (+) | 1113 | WP_212607096.1 | tyrosine-type recombinase/integrase | - |
| JSQ81_RS07830 (JSQ81_07830) | clpP | 1529211..1529810 (+) | 600 | WP_305849488.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| JSQ81_RS07840 (JSQ81_07840) | - | 1531754..1532011 (-) | 258 | WP_212607098.1 | HPr family phosphocarrier protein | - |
| JSQ81_RS07845 (JSQ81_07845) | whiA | 1532041..1532988 (-) | 948 | WP_212607099.1 | DNA-binding protein WhiA | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17263.99 Da Isoelectric Point: 7.1646
>NTDB_id=540259 JSQ81_RS07640 WP_212607063.1 1493963..1494436(-) (ssbA) [Sporosarcina sp. Marseille-Q4063]
MNNVSLVGRLTKEPTLKFTQNGVAVCNFTLAVNRPFKNANGENEADFIMVQVWRKPAENAANFLKKGSQAAVSGRINSRH
YENDKGDRIYVTEVVADFVQFLDPKPQGQGNQQQQGQGSYQKQPNPYAGNSNAQNQNSNHFETGGGSIAVSDDELPF
MNNVSLVGRLTKEPTLKFTQNGVAVCNFTLAVNRPFKNANGENEADFIMVQVWRKPAENAANFLKKGSQAAVSGRINSRH
YENDKGDRIYVTEVVADFVQFLDPKPQGQGNQQQQGQGSYQKQPNPYAGNSNAQNQNSNHFETGGGSIAVSDDELPF
Nucleotide
Download Length: 474 bp
>NTDB_id=540259 JSQ81_RS07640 WP_212607063.1 1493963..1494436(-) (ssbA) [Sporosarcina sp. Marseille-Q4063]
ATGAATAACGTTAGCTTAGTAGGACGTTTAACAAAAGAACCAACACTTAAATTTACACAAAATGGTGTTGCTGTTTGCAA
CTTTACATTAGCTGTGAATCGTCCGTTTAAAAATGCTAATGGTGAAAATGAAGCGGATTTCATCATGGTACAGGTTTGGA
GGAAGCCTGCTGAAAATGCGGCAAACTTCCTTAAAAAAGGTAGTCAGGCCGCTGTCAGTGGAAGAATTAATAGTCGGCAT
TATGAAAATGATAAAGGGGATCGTATATATGTTACAGAGGTTGTAGCTGACTTTGTACAGTTCTTGGACCCGAAACCACA
AGGTCAAGGCAATCAACAACAGCAAGGACAGGGGAGCTACCAGAAACAACCGAATCCGTATGCTGGTAACAGTAATGCTC
AAAATCAAAATAGTAATCACTTCGAAACGGGTGGAGGTTCTATTGCAGTAAGCGATGATGAACTGCCGTTTTAG
ATGAATAACGTTAGCTTAGTAGGACGTTTAACAAAAGAACCAACACTTAAATTTACACAAAATGGTGTTGCTGTTTGCAA
CTTTACATTAGCTGTGAATCGTCCGTTTAAAAATGCTAATGGTGAAAATGAAGCGGATTTCATCATGGTACAGGTTTGGA
GGAAGCCTGCTGAAAATGCGGCAAACTTCCTTAAAAAAGGTAGTCAGGCCGCTGTCAGTGGAAGAATTAATAGTCGGCAT
TATGAAAATGATAAAGGGGATCGTATATATGTTACAGAGGTTGTAGCTGACTTTGTACAGTTCTTGGACCCGAAACCACA
AGGTCAAGGCAATCAACAACAGCAAGGACAGGGGAGCTACCAGAAACAACCGAATCCGTATGCTGGTAACAGTAATGCTC
AAAATCAAAATAGTAATCACTTCGAAACGGGTGGAGGTTCTATTGCAGTAAGCGATGATGAACTGCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.123 |
100 |
0.535 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.154 |
100 |
0.497 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.516 |
0.401 |