Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LL046_RS02045 Genome accession   NZ_CP086088
Coordinates   391914..392696 (+) Length   260 a.a.
NCBI ID   WP_211752553.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 386914..397696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS02020 (LL046_02005) vicX 386939..387751 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL046_RS02025 (LL046_02010) vicK 387920..389362 (-) 1443 WP_240819039.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL046_RS02030 (LL046_02015) yycF 389355..390056 (-) 702 WP_003131580.1 response regulator YycF -
  LL046_RS02035 (LL046_02020) tmk 390234..390869 (+) 636 WP_012897230.1 dTMP kinase -
  LL046_RS02040 (LL046_02025) - 391002..391862 (+) 861 WP_058203378.1 DNA polymerase III subunit delta' -
  LL046_RS02045 (LL046_02030) yaaT 391914..392696 (+) 783 WP_211752553.1 stage 0 sporulation family protein Regulator
  LL046_RS02050 (LL046_02035) yabA 392689..393015 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LL046_RS02055 (LL046_02040) rsmI 393015..393890 (+) 876 WP_211752552.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL046_RS02060 (LL046_02045) - 393967..394158 (-) 192 WP_012897234.1 hypothetical protein -
  LL046_RS02065 (LL046_02050) - 395187..395519 (-) 333 WP_129300062.1 hypothetical protein -
  LL046_RS02070 (LL046_02055) - 395519..395830 (-) 312 WP_058225857.1 hypothetical protein -
  LL046_RS02075 (LL046_02060) - 396039..396611 (-) 573 WP_023163758.1 hypothetical protein -
  LL046_RS02080 (LL046_02065) - 396625..396939 (-) 315 WP_129300060.1 hypothetical protein -
  LL046_RS02085 (LL046_02070) - 397059..397208 (-) 150 WP_023163760.1 hypothetical protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29801.25 Da        Isoelectric Point: 5.7444

>NTDB_id=540257 LL046_RS02045 WP_211752553.1 391914..392696(+) (yaaT) [Lactococcus lactis subsp. lactis strain EIP13A]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELAITFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGNGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=540257 LL046_RS02045 WP_211752553.1 391914..392696(+) (yaaT) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAATAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGGGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTAAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACTTCAGAAGGAAACGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388