Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LL046_RS02020 Genome accession   NZ_CP086088
Coordinates   386939..387751 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 381939..392751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS01995 (LL046_01980) ytpR 382165..382791 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LL046_RS02000 (LL046_01985) nox 382954..384294 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  LL046_RS02005 (LL046_01990) - 384381..384772 (+) 392 Protein_383 single-stranded DNA-binding protein -
  LL046_RS02010 (LL046_01995) groES 384892..385176 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL046_RS02015 (LL046_02000) groL 385264..386892 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LL046_RS02020 (LL046_02005) vicX 386939..387751 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL046_RS02025 (LL046_02010) vicK 387920..389362 (-) 1443 WP_240819039.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL046_RS02030 (LL046_02015) yycF 389355..390056 (-) 702 WP_003131580.1 response regulator YycF -
  LL046_RS02035 (LL046_02020) tmk 390234..390869 (+) 636 WP_012897230.1 dTMP kinase -
  LL046_RS02040 (LL046_02025) - 391002..391862 (+) 861 WP_058203378.1 DNA polymerase III subunit delta' -
  LL046_RS02045 (LL046_02030) yaaT 391914..392696 (+) 783 WP_211752553.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=540254 LL046_RS02020 WP_003131583.1 386939..387751(-) (vicX) [Lactococcus lactis subsp. lactis strain EIP13A]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=540254 LL046_RS02020 WP_003131583.1 386939..387751(-) (vicX) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685