Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   LL045_RS10985 Genome accession   NZ_CP086083
Coordinates   2245194..2245859 (+) Length   221 a.a.
NCBI ID   WP_394530195.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2240194..2250859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS10955 (LL045_10925) - 2241330..2241662 (-) 333 WP_098394190.1 lactococcin 972 family bacteriocin -
  LL045_RS10960 (LL045_10930) - 2241962..2242690 (-) 729 WP_270220289.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  LL045_RS10965 (LL045_10935) - 2242883..2243104 (+) 222 WP_021723106.1 YqgQ family protein -
  LL045_RS10970 (LL045_10940) - 2243138..2244109 (+) 972 WP_021723105.1 ROK family glucokinase -
  LL045_RS10975 (LL045_10945) - 2244112..2244498 (+) 387 WP_021723104.1 rhodanese-like domain-containing protein -
  LL045_RS10980 (LL045_10950) - 2244581..2245027 (-) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  LL045_RS10985 (LL045_10955) cclA/cilC 2245194..2245859 (+) 666 WP_394530195.1 prepilin peptidase Machinery gene
  LL045_RS10990 (LL045_10960) dinB 2245810..2246904 (-) 1095 WP_038602265.1 DNA polymerase IV -
  LL045_RS10995 (LL045_10965) - 2246983..2247474 (-) 492 WP_058205034.1 prolyl-tRNA synthetase associated domain-containing protein -
  LL045_RS11000 (LL045_10970) - 2247553..2249046 (-) 1494 WP_021723101.1 basic amino acid/polyamine antiporter -
  LL045_RS11005 (LL045_10975) - 2249238..2250368 (-) 1131 WP_038602271.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25684.83 Da        Isoelectric Point: 8.8509

>NTDB_id=540220 LL045_RS10985 WP_394530195.1 2245194..2245859(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain EIP20A]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQRLLAYRDLIPIFSQLSSGSQCRYCKSKIPYLYIFLEFST
ALIFVLAWVNYLNPSQFLMIILSLILSAFDYRHHSFPFVTWFIFALSFILIFPLSPIFYFWLILALLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=540220 LL045_RS10985 WP_394530195.1 2245194..2245859(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCATTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCGATTATTTTTGGACGTTCACATTGTGATTCTTGTCAGCGACTTTTAGCCTATCGTGATTTAATTCCTATTTTTT
CTCAATTAAGCTCGGGCTCACAATGCCGTTATTGTAAAAGTAAAATTCCATATCTATATATTTTTTTGGAGTTCTCAACA
GCTTTAATTTTTGTTTTGGCTTGGGTAAATTATCTTAACCCTAGTCAATTTTTAATGATTATTCTTTCGCTAATTTTATC
TGCTTTTGATTATCGTCACCACAGTTTTCCTTTTGTTACCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCATTTTTTATTTTTGGCTTATTTTAGCCCTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362