Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LL047_RS12115 Genome accession   NZ_CP086072
Coordinates   2365519..2366112 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain EIP33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2360519..2371112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL047_RS12090 (LL047_12055) - 2360727..2360891 (-) 165 WP_003131988.1 hypothetical protein -
  LL047_RS12095 (LL047_12060) - 2360996..2361613 (-) 618 WP_010906379.1 AAA family ATPase -
  LL047_RS12100 (LL047_12065) - 2361610..2362794 (-) 1185 WP_010906380.1 ABC transporter permease -
  LL047_RS12105 (LL047_12070) - 2363371..2364255 (-) 885 WP_347688994.1 helix-turn-helix domain-containing protein -
  LL047_RS12110 (LL047_12075) ruvB 2364392..2365393 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LL047_RS12115 (LL047_12080) ruvA 2365519..2366112 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LL047_RS12120 (LL047_12085) hexB 2366225..2368195 (-) 1971 WP_031297070.1 DNA mismatch repair endonuclease MutL Machinery gene
  LL047_RS12125 (LL047_12090) - 2368324..2369019 (-) 696 WP_010906384.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=540148 LL047_RS12115 WP_003131995.1 2365519..2366112(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP33]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=540148 LL047_RS12115 WP_003131995.1 2365519..2366112(-) (ruvA) [Lactococcus lactis subsp. lactis strain EIP33]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462