Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GGS_RS08935 Genome accession   NC_018712
Coordinates   1834791..1835282 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1829791..1840282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS08920 (GGS_1696) - 1832568..1833512 (+) 945 WP_003059456.1 magnesium transporter CorA family protein -
  GGS_RS08925 (GGS_1697) - 1833644..1834300 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  GGS_RS08930 rpsR 1834433..1834672 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  GGS_RS08935 (GGS_1699) ssbA 1834791..1835282 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  GGS_RS08940 (GGS_1700) rpsF 1835304..1835594 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  GGS_RS11345 (GGS_1701) - 1836553..1836846 (-) 294 WP_014612572.1 hypothetical protein -
  GGS_RS08950 (GGS_1702) mutY 1837011..1838177 (+) 1167 WP_042357990.1 A/G-specific adenine glycosylase -
  GGS_RS08955 (GGS_1703) trxA 1838228..1838542 (-) 315 WP_003052691.1 thioredoxin -
  GGS_RS08960 - 1838765..1840084 (+) 1320 Protein_1730 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=53977 GGS_RS08935 WP_002993238.1 1834791..1835282(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=53977 GGS_RS08935 WP_002993238.1 1834791..1835282(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment