Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LJC78_RS10130 Genome accession   NZ_CP086007
Coordinates   1905530..1906147 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900530..1911147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS10100 (LJC78_10100) yndJ 1900849..1902489 (+) 1641 WP_014479931.1 YndJ family protein -
  LJC78_RS10105 (LJC78_10105) - 1902579..1902893 (+) 315 Protein_1937 hypothetical protein -
  LJC78_RS10110 (LJC78_10110) pghL 1903118..1903876 (+) 759 WP_014479934.1 gamma-polyglutamate hydrolase PghL -
  LJC78_RS10115 (LJC78_10115) - 1903903..1904352 (-) 450 WP_014479935.1 YndM family protein -
  LJC78_RS10120 (LJC78_10120) fosM 1904561..1904980 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  LJC78_RS10125 (LJC78_10125) - 1904904..1905243 (+) 340 Protein_1941 hypothetical protein -
  LJC78_RS10130 (LJC78_10130) dinR/lexA 1905530..1906147 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  LJC78_RS10135 (LJC78_10135) yneA 1906297..1906614 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  LJC78_RS10140 (LJC78_10140) dinL 1906633..1907286 (+) 654 WP_014479938.1 recombinase family protein -
  LJC78_RS10145 (LJC78_10145) ynzC 1907350..1907583 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  LJC78_RS10150 (LJC78_10150) recP/tkt 1907752..1909755 (+) 2004 WP_014476936.1 transketolase Machinery gene
  LJC78_RS10155 (LJC78_10155) sirA 1909908..1910354 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  LJC78_RS10160 (LJC78_10160) yneF 1910440..1910658 (+) 219 WP_003221221.1 YneF family protein -
  LJC78_RS10165 (LJC78_10165) ynzD 1910732..1910905 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=539619 LJC78_RS10130 WP_003238209.1 1905530..1906147(-) (dinR/lexA) [Bacillus subtilis subsp. natto strain SCP010-1]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=539619 LJC78_RS10130 WP_003238209.1 1905530..1906147(-) (dinR/lexA) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1