Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JRY11_RS04235 Genome accession   NZ_CP070382
Coordinates   819670..820029 (+) Length   119 a.a.
NCBI ID   WP_023188582.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814670..825029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS04220 (JRY11_000852) comGA 817336..818274 (+) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene
  JRY11_RS04225 (JRY11_000853) comGB 818168..819241 (+) 1074 WP_074453836.1 competence type IV pilus assembly protein ComGB Machinery gene
  JRY11_RS04230 (JRY11_000854) comGC 819369..819638 (+) 270 WP_023188581.1 competence type IV pilus major pilin ComGC Machinery gene
  JRY11_RS04235 (JRY11_000855) comGD 819670..820029 (+) 360 WP_023188582.1 competence type IV pilus minor pilin ComGD Machinery gene
  JRY11_RS04240 (JRY11_000856) comGE 820001..820297 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  JRY11_RS04245 (JRY11_000857) comGF 820260..820706 (+) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  JRY11_RS04250 (JRY11_000858) comGG 820745..821029 (+) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  JRY11_RS04255 (JRY11_000859) - 821127..821564 (+) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  JRY11_RS04260 (JRY11_000860) - 821561..822403 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  JRY11_RS04265 (JRY11_000861) - 822580..823317 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  JRY11_RS04270 (JRY11_000862) - 823310..824119 (+) 810 WP_014570791.1 metal ABC transporter permease -
  JRY11_RS04275 (JRY11_000863) - 824157..825023 (-) 867 WP_025017140.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13717.95 Da        Isoelectric Point: 7.9853

>NTDB_id=539593 JRY11_RS04235 WP_023188582.1 819670..820029(+) (comGD) [Lactococcus lactis strain KF140]
MLIISFITTLFSSEIIQTVHLFKGELFVLQFENFYKRSQEEAALLQKSESLVAKNQELICEDRSITIPKEVAVKDFTVKF
DDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 360 bp        

>NTDB_id=539593 JRY11_RS04235 WP_023188582.1 819670..820029(+) (comGD) [Lactococcus lactis strain KF140]
TTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTCAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTT
TGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAGAGGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTA
AAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTT
GATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATT
GGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.812

98.319

0.647
  comYD Streptococcus mutans UA140

36.752

98.319

0.361
  comYD Streptococcus mutans UA159

36.752

98.319

0.361