Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JRY11_RS04230 Genome accession   NZ_CP070382
Coordinates   819369..819638 (+) Length   89 a.a.
NCBI ID   WP_023188581.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814369..824638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS04220 (JRY11_000852) comGA 817336..818274 (+) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene
  JRY11_RS04225 (JRY11_000853) comGB 818168..819241 (+) 1074 WP_074453836.1 competence type IV pilus assembly protein ComGB Machinery gene
  JRY11_RS04230 (JRY11_000854) comGC 819369..819638 (+) 270 WP_023188581.1 competence type IV pilus major pilin ComGC Machinery gene
  JRY11_RS04235 (JRY11_000855) comGD 819670..820029 (+) 360 WP_023188582.1 competence type IV pilus minor pilin ComGD Machinery gene
  JRY11_RS04240 (JRY11_000856) comGE 820001..820297 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  JRY11_RS04245 (JRY11_000857) comGF 820260..820706 (+) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  JRY11_RS04250 (JRY11_000858) comGG 820745..821029 (+) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  JRY11_RS04255 (JRY11_000859) - 821127..821564 (+) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  JRY11_RS04260 (JRY11_000860) - 821561..822403 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  JRY11_RS04265 (JRY11_000861) - 822580..823317 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  JRY11_RS04270 (JRY11_000862) - 823310..824119 (+) 810 WP_014570791.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10140.55 Da        Isoelectric Point: 4.2950

>NTDB_id=539592 JRY11_RS04230 WP_023188581.1 819369..819638(+) (comGC) [Lactococcus lactis strain KF140]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLNAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=539592 JRY11_RS04230 WP_023188581.1 819369..819638(+) (comGC) [Lactococcus lactis strain KF140]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAACGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAC
AAAAATGAAGAACGAAATTTTAATGACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

86.667

84.27

0.73
  comYC Streptococcus gordonii str. Challis substr. CH1

57.647

95.506

0.551
  comGC/cglC Streptococcus pneumoniae Rx1

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae D39

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae R6

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae TIGR4

55.056

100

0.551
  comYC Streptococcus suis isolate S10

58.904

82.022

0.483
  comGC/cglC Streptococcus mitis SK321

55.263

85.393

0.472
  comYC Streptococcus mutans UA140

52.055

82.022

0.427
  comYC Streptococcus mutans UA159

52.055

82.022

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

57.812

71.91

0.416