Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JTM80_RS11335 Genome accession   NZ_CP070366
Coordinates   2743096..2743467 (-) Length   123 a.a.
NCBI ID   WP_172358005.1    Uniprot ID   -
Organism   Thermoleptolyngbya sp. PKUAC-SCTB121     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2738096..2748467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTM80_RS11310 nblS 2738281..2740287 (+) 2007 WP_172358008.1 two-component system sensor histidine kinase NblS -
  JTM80_RS11315 mutY 2740398..2741459 (-) 1062 WP_225906853.1 A/G-specific adenine glycosylase -
  JTM80_RS11320 - 2741621..2741953 (-) 333 WP_068515063.1 DUF760 domain-containing protein -
  JTM80_RS11325 - 2742087..2742476 (-) 390 WP_172358007.1 RidA family protein -
  JTM80_RS11330 - 2742512..2742943 (-) 432 WP_172358006.1 NUDIX hydrolase -
  JTM80_RS11335 pilH 2743096..2743467 (-) 372 WP_172358005.1 PleD family two-component system response regulator Machinery gene
  JTM80_RS11340 psbV 2744013..2744504 (+) 492 WP_068515074.1 photosystem II cytochrome c-550 -
  JTM80_RS11345 - 2745053..2746540 (+) 1488 WP_205371203.1 WD40 repeat domain-containing protein -
  JTM80_RS11350 - 2746731..2747318 (+) 588 WP_172358003.1 DUF924 family protein -
  JTM80_RS11355 - 2747463..2748170 (+) 708 WP_172358002.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13986.31 Da        Isoelectric Point: 5.7159

>NTDB_id=539485 JTM80_RS11335 WP_172358005.1 2743096..2743467(-) (pilH) [Thermoleptolyngbya sp. PKUAC-SCTB121]
MRTVLIVDDSQTLRQMLLELLQGNGLQVMEATNGIEAKAMIQSNAPDLVITDLIMPEMNGYELCRWIKNDPAAQKIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPPELLKTVKQLLQSHR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=539485 JTM80_RS11335 WP_172358005.1 2743096..2743467(-) (pilH) [Thermoleptolyngbya sp. PKUAC-SCTB121]
ATGAGAACCGTGTTGATTGTGGACGACAGCCAAACCCTGCGGCAAATGCTTTTGGAACTGCTTCAGGGTAACGGACTCCA
AGTCATGGAGGCAACCAACGGCATCGAGGCCAAGGCGATGATCCAATCCAACGCCCCGGATCTGGTCATCACTGACCTGA
TCATGCCGGAGATGAACGGCTACGAACTTTGTCGCTGGATCAAGAACGACCCCGCTGCTCAAAAAATTCCCGTCCTCATC
TGCTCGACAAAAAGCGAAGAATTTGACCGCTATTGGGGCATGAAGCAGGGCGCAGATGCTTATATCACCAAGCCCTTTCA
CCCGCCAGAACTGCTGAAGACCGTCAAGCAACTGCTCCAGAGCCACCGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.545

98.374

0.537
  pilG Acinetobacter baumannii strain A118

40.678

95.935

0.39
  micA Streptococcus pneumoniae Cp1015

37.5

97.561

0.366