Detailed information NTG0539378

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JVX91_RS23860
• Genome accession: NZ_CP070356
• Coordinates: 5293910..5296120 (-)
• Length: 736 a.a.
• NCBI ID: WP_205340090.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PDNC002
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5288910..5301120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX91_RS23825 (JVX91_23825)	murB	5289267..5290286 (-)	1020	WP_205336555.1	UDP-N-acetylmuramate dehydrogenase	-
JVX91_RS23830 (JVX91_23830)	-	5290283..5290747 (-)	465	WP_205336556.1	low molecular weight protein-tyrosine-phosphatase	-
JVX91_RS23835 (JVX91_23835)	kdsB	5290747..5291511 (-)	765	WP_205336557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JVX91_RS23840 (JVX91_23840)	-	5291516..5291701 (-)	186	WP_081519465.1	Trm112 family protein	-
JVX91_RS23845 (JVX91_23845)	lpxK	5291759..5292757 (-)	999	WP_205336558.1	tetraacyldisaccharide 4'-kinase	-
JVX91_RS23850 (JVX91_23850)	-	5292757..5293206 (-)	450	WP_205336559.1	biopolymer transporter ExbD	-
JVX91_RS23855 (JVX91_23855)	exbB	5293203..5293838 (-)	636	WP_017519262.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JVX91_RS23860 (JVX91_23860)	comA	5293910..5296120 (-)	2211	WP_205340090.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JVX91_RS23865 (JVX91_23865)	-	5296273..5296803 (+)	531	WP_205336560.1	DUF2062 domain-containing protein	-
JVX91_RS23870 (JVX91_23870)	-	5296978..5298225 (-)	1248	WP_205336561.1	lipoprotein-releasing ABC transporter permease subunit	-
JVX91_RS23875 (JVX91_23875)	lolD	5298237..5298926 (-)	690	WP_205336562.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
JVX91_RS23880 (JVX91_23880)	-	5298919..5300172 (-)	1254	WP_205336563.1	lipoprotein-releasing ABC transporter permease subunit	-
JVX91_RS23885 (JVX91_23885)	-	5300298..5300873 (+)	576	WP_205336564.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79786.32 Da
• Isoelectric Point: 8.6868

>NTDB_id=539378 JVX91_RS23860 WP_205340090.1 5293910..5296120(-) (comA) [Pseudomonas sp. PDNC002]
MFALACGLLLLRWMPVLPPGWVLLLLSAFALPLLFTRAYFIGLFLLGFAWACQSAQWALDDRLARELDGRTLWLEGRVEG
LPDRTGPSVRFMLTDVTSPRLRVPATLRVSWFGGPPVEGGERWRLAVKLKRPHGMVNGAGFDYEAWLTAQRIGATGSVKD
GQRLQSASGPNAWREAWRQRLLAVDAHGRSGALAALVLGDASGLTPADWQVLQDTGTLHLMVISGSHISLLAGLLYALIA
ALARFGCWPARLPWLPCACLLAAAGAWSYSLMAGFDVPLQRACIMVSIVLLWRLRYRHRGLWTPLLGALLAVLLAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAVGLLPASIALGLPLSISSVIANLVAVPWVEMAVVPLALLG
SLSLGLPWVGEALLWVSGWLLDLLFQWLGWMAGLAPAWQPVAAPAWALSVAMLGALLLLAPAGMPLRALGLAMFLPVFWP
TISRPPPGQAEIRVLDVGQGLSVLIRTRNHAWLYDTGARNGDFDIGERVVVPTLRSLGIDHLDMLMLSHADNDHAGGAPA
VKAALRPAHVVSGEPDRLPAELRAAPCPGTHWDIDGVRLSSWAWKGARESNDRSCVLEVTADGERLLLTGDLPQPGEIAW
LAEHPGVHIDWLLAGHHGSRSSSGPIFLRAIGPSAALISRGANNPYGHPHPSVVERFRALGIRIHDTAEQGALTLMLGAH
GELRGVREGAHFWQEN

Nucleotide

• Length: 2211 bp

>NTDB_id=539378 JVX91_RS23860 WP_205340090.1 5293910..5296120(-) (comA) [Pseudomonas sp. PDNC002]
ATGTTCGCGCTGGCCTGCGGGCTGCTACTCCTGCGCTGGATGCCGGTGCTCCCGCCGGGCTGGGTGCTGCTGCTTCTGTC
CGCCTTCGCGCTGCCCCTATTGTTTACCCGCGCCTACTTCATCGGCCTGTTCCTGCTGGGGTTCGCCTGGGCCTGCCAGT
CGGCGCAGTGGGCGCTGGACGATCGCCTGGCCCGAGAGCTGGATGGCCGCACGTTGTGGCTGGAGGGCAGGGTAGAAGGC
TTGCCCGATCGCACCGGGCCCTCGGTGCGCTTCATGCTCACCGACGTCACCAGTCCGCGCCTCAGGGTACCCGCCACGTT
GCGGGTGTCCTGGTTCGGCGGTCCGCCGGTCGAAGGGGGCGAGCGCTGGCGCTTGGCGGTGAAGCTCAAGCGGCCGCATG
GCATGGTCAACGGCGCGGGTTTCGACTATGAAGCCTGGCTTACCGCGCAGCGCATCGGCGCCACCGGCAGCGTCAAGGAT
GGACAGCGGCTCCAGTCGGCCAGCGGGCCAAACGCCTGGCGCGAGGCCTGGCGGCAGCGCCTGCTGGCAGTGGATGCCCA
CGGCCGCTCTGGCGCCTTGGCGGCGCTGGTGCTGGGCGATGCCTCCGGGCTGACGCCAGCGGACTGGCAGGTCCTGCAGG
ACACCGGAACCCTCCACCTGATGGTGATTTCCGGCTCGCACATCTCGTTGCTGGCGGGGCTGCTCTACGCGCTGATCGCG
GCACTCGCGCGTTTTGGCTGCTGGCCGGCGCGCCTGCCTTGGCTGCCGTGTGCCTGTCTGCTGGCGGCGGCCGGCGCCTG
GAGCTACAGCCTGATGGCGGGGTTCGACGTGCCGTTGCAGCGCGCCTGCATCATGGTGTCCATCGTCCTGCTGTGGCGTC
TGCGATACCGACATCGCGGGTTGTGGACACCGTTGCTCGGCGCTCTGCTGGCGGTGCTGCTGGCCGAACCGTTGGTAGTG
CTGTTACCGGGGTTCTGGTTGTCCTACGCAGCCGTCGCCTTGCTGATCTTCGGCTTCTCCGGCCGGCTTGGCCGTTGGAC
CGCCTGGCGCACCTGGCTGCGTGCGCAGTGGCTGATGGCGGTCGGGCTGCTGCCGGCGTCCATCGCGCTGGGGCTGCCGC
TGAGCATTTCAAGCGTGATTGCCAACCTGGTCGCGGTGCCCTGGGTGGAGATGGCGGTCGTGCCGCTGGCGCTGCTCGGC
AGCCTGTCGCTTGGGCTGCCCTGGGTGGGCGAGGCGCTCCTCTGGGTGTCCGGTTGGTTGCTCGACCTGCTCTTCCAATG
GCTGGGCTGGATGGCGGGGCTGGCGCCTGCGTGGCAGCCGGTGGCGGCGCCGGCCTGGGCGCTATCCGTGGCCATGCTGG
GCGCCCTGTTGCTGCTGGCTCCAGCGGGAATGCCACTGCGCGCGCTCGGGTTGGCGATGTTCCTGCCGGTGTTCTGGCCG
ACGATTTCGCGGCCGCCACCTGGGCAGGCGGAAATCCGTGTGCTTGATGTCGGACAGGGGTTGTCAGTATTGATTCGCAC
GCGAAATCACGCCTGGCTCTACGACACCGGCGCGCGCAACGGTGACTTCGATATTGGCGAGCGGGTGGTCGTGCCGACGT
TGCGCAGCCTGGGCATCGACCACCTCGACATGCTGATGCTCAGCCATGCGGACAACGACCACGCGGGCGGTGCCCCGGCG
GTGAAGGCGGCCTTGCGACCGGCCCATGTGGTCAGCGGGGAGCCCGATCGCCTGCCGGCGGAGCTGCGGGCGGCACCGTG
CCCCGGTACGCACTGGGACATCGATGGCGTGCGCCTGTCTTCGTGGGCGTGGAAGGGCGCGCGGGAAAGCAACGACCGCT
CCTGCGTGCTGGAGGTCACTGCCGACGGAGAGCGACTGCTGTTGACCGGCGACCTGCCGCAGCCAGGTGAGATCGCCTGG
CTGGCCGAACACCCCGGCGTCCACATCGACTGGCTGCTCGCCGGGCACCACGGCAGCCGCAGTTCTTCGGGCCCGATCTT
CCTTCGTGCGATCGGGCCCTCCGCGGCATTGATTTCCCGTGGCGCCAACAACCCCTACGGCCATCCCCATCCGTCGGTCG
TGGAGCGCTTCCGCGCACTGGGTATACGGATTCACGATACGGCGGAGCAGGGCGCGCTGACCCTGATGCTCGGTGCCCAT
GGCGAGCTCCGGGGAGTGCGGGAGGGTGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (196-460)

• Domain of unknown function (DUF4131) (DUF4131) (18-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.217	97.554	0.568
comA	Ralstonia pseudosolanacearum GMI1000	34.505	100	0.36