Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JVX91_RS23855 Genome accession   NZ_CP070356
Coordinates   5293203..5293838 (-) Length   211 a.a.
NCBI ID   WP_017519262.1    Uniprot ID   A0A1B8V541
Organism   Pseudomonas sp. PDNC002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5288203..5298838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS23825 (JVX91_23825) murB 5289267..5290286 (-) 1020 WP_205336555.1 UDP-N-acetylmuramate dehydrogenase -
  JVX91_RS23830 (JVX91_23830) - 5290283..5290747 (-) 465 WP_205336556.1 low molecular weight protein-tyrosine-phosphatase -
  JVX91_RS23835 (JVX91_23835) kdsB 5290747..5291511 (-) 765 WP_205336557.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JVX91_RS23840 (JVX91_23840) - 5291516..5291701 (-) 186 WP_081519465.1 Trm112 family protein -
  JVX91_RS23845 (JVX91_23845) lpxK 5291759..5292757 (-) 999 WP_205336558.1 tetraacyldisaccharide 4'-kinase -
  JVX91_RS23850 (JVX91_23850) - 5292757..5293206 (-) 450 WP_205336559.1 biopolymer transporter ExbD -
  JVX91_RS23855 (JVX91_23855) exbB 5293203..5293838 (-) 636 WP_017519262.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JVX91_RS23860 (JVX91_23860) comA 5293910..5296120 (-) 2211 WP_205340090.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JVX91_RS23865 (JVX91_23865) - 5296273..5296803 (+) 531 WP_205336560.1 DUF2062 domain-containing protein -
  JVX91_RS23870 (JVX91_23870) - 5296978..5298225 (-) 1248 WP_205336561.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.24 Da        Isoelectric Point: 7.2806

>NTDB_id=539377 JVX91_RS23855 WP_017519262.1 5293203..5293838(-) (exbB) [Pseudomonas sp. PDNC002]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=539377 JVX91_RS23855 WP_017519262.1 5293203..5293838(-) (exbB) [Pseudomonas sp. PDNC002]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
TGAACGTCTGTGGACCCTGCGCCTGAGCCGTGTGGCGCCGCCGCAACTGCTCGGTCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCGTCGTCTCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCTCCCGCGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGTGACGGCATGGCCAACGCGCCGATGCTCGCTGGCGGTATCTCCAAGGCGCTGATCACCACCGCGGCC
GGCCTGATCGTGGCGATCCCGGCGGTGTTCTTCCACCGTTACCTGCTGCGCCGCGTCGATGAGCTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGTGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8V541

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81