Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JVX94_RS18955 Genome accession   NZ_CP070345
Coordinates   3728260..3728901 (+) Length   213 a.a.
NCBI ID   WP_095409464.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723260..3733901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS18930 (JVX94_18930) - 3723578..3723934 (-) 357 WP_205184124.1 inner spore coat protein -
  JVX94_RS18935 (JVX94_18935) degQ 3724440..3724580 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  JVX94_RS18940 (JVX94_18940) - 3724732..3725646 (+) 915 WP_095409467.1 polyprenyl synthetase family protein -
  JVX94_RS18945 (JVX94_18945) comX 3725643..3725813 (+) 171 WP_189310220.1 competence pheromone ComX -
  JVX94_RS18950 (JVX94_18950) comP 3725867..3728179 (+) 2313 WP_095409465.1 ATP-binding protein Regulator
  JVX94_RS18955 (JVX94_18955) comA 3728260..3728901 (+) 642 WP_095409464.1 response regulator transcription factor Regulator
  JVX94_RS18960 (JVX94_18960) - 3728925..3729314 (+) 390 WP_095409463.1 hotdog fold thioesterase -
  JVX94_RS18965 (JVX94_18965) mnhG 3729419..3729793 (-) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  JVX94_RS18970 (JVX94_18970) - 3729777..3730058 (-) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  JVX94_RS18975 (JVX94_18975) - 3730058..3730537 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  JVX94_RS18980 (JVX94_18980) - 3730544..3732022 (-) 1479 WP_095409462.1 Na+/H+ antiporter subunit D -
  JVX94_RS18985 (JVX94_18985) - 3732015..3732356 (-) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  JVX94_RS18990 (JVX94_18990) - 3732356..3732787 (-) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5634

>NTDB_id=539322 JVX94_RS18955 WP_095409464.1 3728260..3728901(+) (comA) [Bacillus sp. PDNC022]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=539322 JVX94_RS18955 WP_095409464.1 3728260..3728901(+) (comA) [Bacillus sp. PDNC022]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGAAACCAACCAGCAAGTAAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGACCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723