Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PCC6301pg_RS02900 Genome accession   NZ_CP085785
Coordinates   543139..545139 (-) Length   666 a.a.
NCBI ID   WP_011243271.1    Uniprot ID   Q31QS4
Organism   Synechococcus elongatus PCC 6301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 538139..550139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC6301pg_RS02865 (PCC6301pg_0574) - 538243..538704 (-) 462 WP_247223792.1 response regulator transcription factor -
  PCC6301pg_RS02870 (PCC6301pg_0575) - 538899..539090 (+) 192 WP_011377622.1 hypothetical protein -
  PCC6301pg_RS02875 (PCC6301pg_0576) - 539168..539782 (+) 615 WP_011243276.1 CPP1-like family protein -
  PCC6301pg_RS02880 (PCC6301pg_0577) hslO 539834..540727 (-) 894 WP_011243275.1 Hsp33 family molecular chaperone HslO -
  PCC6301pg_RS02885 (PCC6301pg_0578) - 540760..541464 (-) 705 WP_011377623.1 ABC transporter ATP-binding protein -
  PCC6301pg_RS02890 (PCC6301pg_0579) - 541539..542534 (+) 996 WP_011377624.1 Sll0314/Alr1548 family TPR repeat-containing protein -
  PCC6301pg_RS02895 (PCC6301pg_0580) - 542626..543081 (+) 456 WP_011243272.1 DUF3531 family protein -
  PCC6301pg_RS02900 (PCC6301pg_0581) uvrB 543139..545139 (-) 2001 WP_011243271.1 excinuclease ABC subunit UvrB Machinery gene
  PCC6301pg_RS02905 (PCC6301pg_0582) - 545259..545972 (+) 714 WP_011243270.1 DevA family ABC transporter ATP-binding protein -
  PCC6301pg_RS02910 (PCC6301pg_0583) - 546073..546735 (+) 663 WP_011243269.1 FHA domain-containing protein -
  PCC6301pg_RS02915 (PCC6301pg_0584) - 546732..547502 (+) 771 WP_011243268.1 HAD family hydrolase -
  PCC6301pg_RS02920 (PCC6301pg_0585) - 547504..548853 (-) 1350 WP_011377626.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76250.65 Da        Isoelectric Point: 4.8476

>NTDB_id=538834 PCC6301pg_RS02900 WP_011243271.1 543139..545139(-) (uvrB) [Synechococcus elongatus PCC 6301]
MTPFQLQARYQPMGDQPTAIAQLVEQVQAGAPYQTLLGATGTGKTFTIANVIAQVGRPALVLAHNKTLAAQLCNELREFF
PNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPL
EVGAEINMREVLRQLVDVQYSRNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLN
IYPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYCNGVENYARHLAGREPGSPP
ECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLVDHGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIE
RSEEQIVEQVIRPTGVVDPEVFVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEINS
IERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADRMTESME
KAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAA
KNLEFEEAAQYRDRIKKLRERLVGRH

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=538834 PCC6301pg_RS02900 WP_011243271.1 543139..545139(-) (uvrB) [Synechococcus elongatus PCC 6301]
ATGACGCCCTTTCAACTGCAAGCCCGCTATCAACCGATGGGAGACCAACCGACTGCGATCGCGCAGTTGGTCGAACAAGT
TCAGGCCGGTGCTCCCTATCAAACCTTGCTGGGCGCGACTGGAACGGGCAAGACTTTTACGATCGCCAACGTGATTGCGC
AGGTGGGGCGCCCAGCCTTAGTACTGGCCCACAACAAGACCTTAGCGGCTCAGCTGTGCAATGAGCTGCGTGAGTTTTTC
CCGAATAACGCCGTCGAGTATTTCATCAGCTATTACGACTACTATCAACCGGAAGCTTACATTCCGGTGACCGACACTTA
TATCGCCAAAACAGCTTCGATCAATGAAGAGATCGATATGCTTCGGCACTCCGCCACGCGAAACTTATTTGAGCGACGTG
ATGTAATTGTCGTTGCTTCAATTAGCTGCATCTATGGCTTGGGTATTCCTAGCGAGTATTTAAAAGCAGCAATCCCGCTA
GAAGTCGGGGCTGAAATCAATATGCGCGAGGTTTTGCGACAACTCGTTGATGTTCAATACAGTCGCAATGATCTGGAGTC
AGGTCGCGGTCGATTCCGGGTGAAAGGCGATGTCCTCGAAATCGGCCCAGCCTATGAGGATCGGATTATTCGGGTCGAAT
TTTTTGGTGATGAAATTGATGCGATTCGCTATATCGATCCAGTCACCGGCGAAATCCTCCAAAGCCTCGATCGCCTCAAT
ATCTATCCTGCCCGTCACTTTGTGACGCCAGAAGAACGGCTGGAAATTGCGATCGCAGAAATCAAAGAAGAACTCAATCA
GCAGCTCCTGACTTTACAAGCAGAAGGCAAACTGGTGGAGGCTCAGCGGCTCGAGCAACGCACCCGCTATGACCTCGAAA
TGCTGCAGGAAGTGGGCTACTGCAACGGCGTTGAAAACTATGCCCGCCATCTCGCTGGCCGCGAGCCCGGATCGCCCCCA
GAATGTCTGATCGACTACTTCCCAAAAGATTGGCTCCTCGTTGTTGATGAATCCCACGTCACCGTTCCGCAGTTGCGGGG
CATGTATAACGGTGATCAGTCTCGCAAAAAGGTTTTGGTGGATCACGGCTTCCGCTTGCCAAGCGCTGCAGATAACCGTC
CACTAAAGTCGGAGGAATTTTGGGAGAAAGTGCGTCAGTGCATTTTTGTCTCAGCAACGCCTGGTGATTGGGAAATAGAG
CGATCGGAAGAGCAGATTGTTGAGCAAGTGATTCGCCCGACAGGCGTGGTTGATCCCGAGGTTTTCGTTCGCCCCACGGA
AGGACAAGTTGATGATCTCCTCGCTGAAATTCAGCAGCGGGTCCGTCGCCAAGAGCGAGCATTGATTACGACGCTGACCA
AGCGAATGGCTGAGGATTTAACGGATTATTTGAGCGATCGCGGCGTTAAAGTTCGCTATCTCCACTCAGAGATCAACTCG
ATCGAACGAATTGAAATCCTGCAGGATTTGCGCAATGGCGATTTTGATGTCTTGATTGGGGTTAACTTGCTACGGGAAGG
CTTAGACCTGCCAGAGGTATCCCTAGTCGCTATTTTGGATGCCGACAAGGAAGGCTTTTTGCGGACGGAACGCAGCCTCA
TTCAAACGATTGGGCGAGCAGCTCGCCACATCAATGGCCAAGCGATTCTGTATGCCGATCGCATGACCGAAAGTATGGAG
AAGGCGATCAGTGAAACGGAACGACGGCGACGTATTCAATTGGATTACAACCAACGTCACAACATTACCCCTCAACCGAT
TATCAAGCGATCGAGCAACGCCATTCTCTCGTTCCTTGAAGTCTCGCGGCGGCTGAATAAGCAAGAGTTAGAAGTAGCAG
TCAGTCAAGCCGATGATCTCTCCCTCGAAGAGATTCCCAACTTGATTACGCAACTAGAAGCCCAGATGAAAGAGGCCGCT
AAAAATCTGGAATTTGAGGAGGCTGCTCAATACCGCGATCGCATTAAGAAATTACGTGAACGACTGGTGGGTCGCCACTA
A

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(627-660)

Helicase conserved C-terminal domain (Helicase_C)

(432-542)

UvrB interaction domain (UvrB_inter)

(158-247)

Type III restriction enzyme, res subunit (ResIII)

(14-118)

Ultra-violet resistance protein B (UvrB)

(550-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31QS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae R6

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae D39

58.967

98.799

0.583