Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   M3Q_RS18375 Genome accession   NC_018706
Coordinates   3873910..3874650 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii TYTH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3868910..3879650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Q_RS18355 (M3Q_3617) aroB 3869447..3870529 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  M3Q_RS18360 (M3Q_3618) aroK 3870558..3871127 (-) 570 WP_000643712.1 shikimate kinase AroK -
  M3Q_RS18365 (M3Q_3619) pilQ 3871139..3873304 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  M3Q_RS18370 (M3Q_3620) pilP 3873372..3873899 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  M3Q_RS18375 (M3Q_3621) pilO 3873910..3874650 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  M3Q_RS18380 (M3Q_3622) pilN 3874647..3875288 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  M3Q_RS18385 (M3Q_3623) pilM 3875288..3876346 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  M3Q_RS18390 (M3Q_3624) ponA 3876509..3879064 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=53879 M3Q_RS18375 WP_000076101.1 3873910..3874650(-) (pilO) [Acinetobacter baumannii TYTH-1]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=53879 M3Q_RS18375 WP_000076101.1 3873910..3874650(-) (pilO) [Acinetobacter baumannii TYTH-1]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment