Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STRIC_RS08290 Genome accession   NZ_AEUX02000007
Coordinates   121486..122127 (+) Length   213 a.a.
NCBI ID   WP_008089757.1    Uniprot ID   G5K4H5
Organism   Streptococcus ictaluri 707-05     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 116486..127127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS08270 (STRIC_1692) - 117028..117765 (+) 738 WP_008090192.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  STRIC_RS08275 (STRIC_1693) pknB 117765..119663 (+) 1899 WP_008090292.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  STRIC_RS08280 (STRIC_1694) liaF 119803..120495 (+) 693 WP_040832312.1 cell wall-active antibiotics response protein LiaF -
  STRIC_RS08285 (STRIC_1695) - 120492..121493 (+) 1002 WP_008090052.1 sensor histidine kinase -
  STRIC_RS08290 (STRIC_1696) vraR 121486..122127 (+) 642 WP_008089757.1 response regulator transcription factor Regulator
  STRIC_RS08295 (STRIC_1697) - 122163..123563 (+) 1401 WP_008089870.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  STRIC_RS08300 (STRIC_1698) - 123563..123925 (+) 363 WP_008089664.1 S1 RNA-binding domain-containing protein -
  STRIC_RS08305 (STRIC_1699) cysK 123811..124773 (-) 963 Protein_119 cysteine synthase A -
  STRIC_RS08310 (STRIC_1700) - 124890..125531 (-) 642 WP_008090309.1 YigZ family protein -
  STRIC_RS08315 - 125587..126866 (+) 1280 Protein_121 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23923.58 Da        Isoelectric Point: 4.8160

>NTDB_id=53876 STRIC_RS08290 WP_008089757.1 121486..122127(+) (vraR) [Streptococcus ictaluri 707-05]
MTKLKIILVDDHEMVRMGLKSFFNLQADIEVVGEASNGREGVDLALSLKPDVVVMDLVMPELDGVEATLEILKEWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQNPDLHDDLTAREYDILHLLA
KGYDNQRIADELFISLKTVKTHVSNILAKLQVEDRTQAVVYAFRHRLVPEDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=53876 STRIC_RS08290 WP_008089757.1 121486..122127(+) (vraR) [Streptococcus ictaluri 707-05]
ATGACTAAATTAAAAATAATACTTGTAGATGATCATGAAATGGTTCGTATGGGCCTCAAAAGTTTTTTTAATTTACAAGC
TGATATTGAAGTAGTAGGAGAAGCCTCTAATGGACGTGAGGGTGTAGACTTAGCTCTTTCTCTCAAACCAGATGTTGTGG
TTATGGATTTAGTCATGCCAGAGCTTGATGGAGTTGAAGCGACTTTAGAAATTCTAAAAGAATGGAAAGAAGCCAAAGTC
TTAGTTTTGACGTCTTATCTTGATAACGAAAAGATTTATCCTGTCATTGATGCAGGTGCCAAGGGCTACATGTTAAAAAC
CTCAAGTGCAGCTGAAATTTTAAATGCAATTCGAAAAGTAGCTAAAGGTGAATTAGCTATCGAAACAGAAGTGGATAAAA
AAATCAAAGCTCATGACCAAAATCCTGATTTGCATGATGACTTAACAGCAAGAGAATATGATATTTTACATTTGCTGGCT
AAAGGTTATGACAATCAAAGAATCGCAGATGAACTCTTTATCTCTTTAAAAACAGTTAAAACACACGTGTCCAATATTTT
AGCTAAATTACAAGTCGAAGATCGAACACAGGCTGTTGTGTACGCTTTCAGACACCGTTTAGTGCCCGAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K4H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.456

96.714

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.399

Multiple sequence alignment