Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LI754_RS08790 Genome accession   NZ_CP085320
Coordinates   1794424..1795026 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain CJFA-182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1789424..1800026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS08770 yajC 1790920..1791180 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  LI754_RS08775 tgt 1791199..1792338 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LI754_RS08780 queA 1792361..1793386 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LI754_RS08785 ruvB 1793388..1794392 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LI754_RS08790 ruvA 1794424..1795026 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LI754_RS08795 - 1795040..1795495 (-) 456 WP_044289971.1 ACT domain-containing protein -
  LI754_RS08800 obgE 1795508..1796800 (-) 1293 WP_000496100.1 GTPase ObgE -
  LI754_RS08805 rpmA 1797426..1797710 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  LI754_RS08810 - 1797722..1798042 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LI754_RS08815 rplU 1798048..1798356 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  LI754_RS08820 mreD 1798718..1799248 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=538403 LI754_RS08790 WP_000271547.1 1794424..1795026(-) (ruvA) [Staphylococcus aureus strain CJFA-182]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=538403 LI754_RS08790 WP_000271547.1 1794424..1795026(-) (ruvA) [Staphylococcus aureus strain CJFA-182]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425