Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LJA35_RS27895 Genome accession   NZ_CP085300
Coordinates   6227299..6229437 (+) Length   712 a.a.
NCBI ID   WP_233647016.1    Uniprot ID   -
Organism   Streptomyces sp. BSE6.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6222299..6234437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA35_RS27870 - 6223070..6223978 (-) 909 WP_165284998.1 pseudouridine-5'-phosphate glycosidase -
  LJA35_RS27875 - 6224114..6224542 (+) 429 WP_102928888.1 VOC family protein -
  LJA35_RS27880 - 6224575..6225129 (-) 555 WP_102928887.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LJA35_RS27885 - 6225220..6226089 (-) 870 WP_102928886.1 glycerophosphodiester phosphodiesterase family protein -
  LJA35_RS27890 - 6226380..6227258 (+) 879 WP_212729897.1 MHYT domain-containing protein -
  LJA35_RS27895 uvrB 6227299..6229437 (+) 2139 WP_233647016.1 excinuclease ABC subunit UvrB Machinery gene
  LJA35_RS27900 - 6229580..6230158 (+) 579 WP_030185838.1 TerD family protein -
  LJA35_RS27905 - 6230269..6232311 (+) 2043 WP_233647017.1 TerD family protein -
  LJA35_RS27910 - 6232562..6233557 (+) 996 WP_212729894.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79829.36 Da        Isoelectric Point: 4.7896

>NTDB_id=538231 LJA35_RS27895 WP_233647016.1 6227299..6229437(+) (uvrB) [Streptomyces sp. BSE6.1]
MRPVSQIERTVAPFEVVSPYQPSGDQPAAIAELARRVQAGEKDVVLLGATGTGKSATTAWMIEKVQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRADGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFVELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAFNKANGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRQAKEGKAAKAPVPALGG
QTADGTKAAKGRAKETAVTDRPAAELAGQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=538231 LJA35_RS27895 WP_233647016.1 6227299..6229437(+) (uvrB) [Streptomyces sp. BSE6.1]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGGCGCGTCCAGGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGGTCCAGCGCCCCACCCTGGTCATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAATTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCCACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCCCTGCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTTCACCCCGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTCTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCCTGGAGCGGGC
GGTCAACGACATCGAGAAGGAGCTGGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCGAACACCCTCCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTGGTCGACCACGGCT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACCGTGTACCTG
TCGGCGACCCCGGGCGCCTACGAGCTCTCCCGGGCGGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCCGAAGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCGTGGAACTCGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACCCTCCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTGGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGATCACGCCCGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCGTTCAACAA
GGCGAACGGCATCGATCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTCCTCGGCTCGGGCTACCGCCAGGCGAAGGAGGGCAAGGCCGCCAAGGCCCCCGTGCCCGCGCTGGGTGGC
CAGACGGCCGACGGGACCAAGGCGGCCAAGGGCCGGGCCAAGGAGACGGCGGTCACCGACCGCCCGGCGGCGGAGCTGGC
CGGACAGATCGAGGACCTGACCACCCGGATGCGGGCCGCCGCGGCCGACCTCCAGTTCGAGATCGCGGCCCGACTGCGCG
ACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(669-701)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.122

96.629

0.552
  uvrB Streptococcus pneumoniae R6

57.122

96.629

0.552
  uvrB Streptococcus pneumoniae D39

57.122

96.629

0.552