NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	LJA36_RS16065	Genome accession	NZ_CP085282
Coordinates	3347269..3347874 (+)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain TPS17
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3342269..3352874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA36_RS16045	nadA	3343080..3344183 (+)	1104	WP_012118097.1	quinolinate synthase NadA	-
LJA36_RS16050	safA	3344310..3345497 (+)	1188	WP_015417918.1	SafA/ExsA family spore coat assembly protein	-
LJA36_RS16055	-	3345646..3346239 (+)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
LJA36_RS16060	-	3346625..3347134 (+)	510	WP_015417917.1	intercompartmental signaling factor BofC	-
LJA36_RS16065	ruvA	3347269..3347874 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
LJA36_RS16070	ruvB	3347885..3348889 (+)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LJA36_RS16075	-	3348882..3349082 (+)	201	WP_031378914.1	DUF2905 domain-containing protein	-
LJA36_RS16080	queA	3349108..3350136 (+)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LJA36_RS16085	tgt	3350164..3351309 (+)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
LJA36_RS16090	yajC	3351340..3351600 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
LJA36_RS16095	-	3351652..3352038 (-)	387	WP_003152697.1	TIGR04086 family membrane protein	-
LJA36_RS16100	-	3352205..3352861 (+)	657	WP_003152699.1	DUF421 domain-containing protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=538140 LJA36_RS16065 WP_003152683.1 3347269..3347874(+) (ruvA) [Bacillus amyloliquefaciens strain TPS17]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=538140 LJA36_RS16065 WP_003152683.1 3347269..3347874(+) (ruvA) [Bacillus amyloliquefaciens strain TPS17]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGTTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTTACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0538140