Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LIN93_RS08600 Genome accession   NZ_CP085091
Coordinates   1731324..1733366 (-) Length   680 a.a.
NCBI ID   WP_014167870.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726324..1738366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS08580 - 1726506..1727636 (+) 1131 WP_005566533.1 N-acetylneuraminate epimerase -
  LIN93_RS08585 nagE 1727885..1729351 (+) 1467 WP_005566531.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  LIN93_RS08590 - 1729690..1729770 (-) 81 Protein_1656 IS200/IS605 family transposase -
  LIN93_RS08595 ompA 1730027..1731097 (-) 1071 WP_005566529.1 porin OmpA -
  LIN93_RS08600 uvrB 1731324..1733366 (-) 2043 WP_014167870.1 excinuclease ABC subunit UvrB Machinery gene
  LIN93_RS08610 zevB 1733978..1735009 (-) 1032 WP_005551275.1 zinc transporter permease subunit ZevB -
  LIN93_RS08615 zevA 1735024..1735656 (-) 633 WP_269190330.1 zinc transporter binding subunit ZevA -
  LIN93_RS08620 ettA 1736069..1737739 (+) 1671 WP_005566523.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 77511.03 Da        Isoelectric Point: 5.2054

>NTDB_id=537588 LIN93_RS08600 WP_014167870.1 1731324..1733366(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain 30S]
MSEKINTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLAPNKTLAAQLYA
EMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
KMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GTVPRFTVYPKTHYVTPRERILDAIEKIKLELAQRREYFIKENKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGGEIIDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYAD
NITKSMEKAITETNRRREKQAKYNEAQGIVPQALNKKVGELLDIGQGANQKAKANKQRGKTVAEPTALYTTPKSPKEYQQ
QIKKLEQQMYKFAQDLEFEKAAATRDQLQQLRESFMLSSE

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=537588 LIN93_RS08600 WP_014167870.1 1731324..1733366(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain 30S]
ATGTCAGAAAAAATTAACACTAAACCTTTTATTCTTCATTCCCATTTCAAACCCTCCGGCGACCAACCCCAGGCCATCGC
AAAATTAGCCGAAAATTTAGAAGATGGCTTGGCACATCAAACCTTGCTTGGGGTAACAGGTTCAGGCAAAACCTTTACCA
TTGCCAATGTGATTGCGCAATTGAATCGCCCTGCGATGGTGTTGGCACCGAACAAAACCCTTGCCGCCCAGCTTTATGCC
GAAATGAAGGATTTTTTCCCGGAAAATGCGGTGGAATATTTTGTTTCTTACTATGATTATTATCAGCCCGAAGCCTATGT
GCCGAGTAGCGATACTTTTATTGAGAAAGACGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCCGCCACAAAAT
CTTTCTTAGAACGGCGCGATACTATTGTAGTGGCGTCCGTGTCCGCTATTTATGGTTTAGGAGACCCCGATTCCTATTTA
AAAATGATGCTGCATTTGCAACAAGGCGCGATTATTAATCAGCGCCAAATCTTGGCAAAATTGGCAGAGTTGCAATATAC
CCGTAATGATCAGGCGTTTCAGCGCGGAACGTTCCGTGTACGGGGAGAAATTATTGATATTTTCCCGGCGGAATCGGACG
ATCGGGCGGTACGTATCGAATTATTTGATGATGAAATCGAACGCTTGAGTTTATTTGATCCGCTCACCGGCAGCAGCTTC
GGCACGGTGCCGCGCTTTACCGTTTATCCGAAAACGCACTATGTCACACCGCGCGAGCGTATCTTGGATGCCATCGAAAA
AATTAAACTGGAATTGGCGCAACGGCGGGAGTATTTCATTAAAGAAAATAAATTATTGGAAGAGCAGCGTATCAGCCAAC
GTACCCAATTTGATATTGAGATGATGAATGAACTCGGTTATTGCTCGGGCATTGAAAACTATTCCCGCTATTTATCGGGT
AGAAATGAGGGCGAACCGCCACCGACCTTATTTGATTATATGCCGTCTGACGCAATTTTGATTATTGACGAATCCCACGT
CACCGTGCCACAAATCGGTGGGATGTATCGCGGCGATCGCTCCCGTAAAGAAACCTTGGTGGAATATGGTTTTCGTCTGC
CTTCTGCGTTGGATAACCGTCCGTTACGTTTTGAAGAATTTGAACGTTTGGCACCGCAAACCATTTATGTTTCCGCCACA
CCGGGACCGTATGAACTGGAAAAATCCGGTGGGGAAATTATCGACCAAGTAGTGCGTCCGACAGGTTTGCTTGATCCGCA
AATTGAAATTCGCCCGGTATCTATTCAGGTGGATGATTTACTTTCCGAAGCACGCCACAGAGCGGATAAAAATGAACGCG
TTTTAGTGACGACATTAACGAAGAAAATGGCGGAAGATCTTACCGACTATTTAGATGAACATGGTATTCGCGTACGTTAT
TTGCATTCTGATATTGATACTGTCGAACGGGTGGAAATTATTCGTGATTTGCGCTTGGGGGAATTTGATGTTTTAGTCGG
CATTAACTTATTACGGGAAGGTTTAGATATTCCGGAAGTGTCTTTAGTGGCAATTTTAGATGCGGATAAAGAAGGTTTTT
TACGTTCCGAGCGTTCATTAATTCAAACGATCGGACGTGCTGCGCGAAATTTACACGGAAAAGCCATTTTGTATGCGGAT
AATATAACCAAATCAATGGAGAAAGCTATTACCGAAACCAATCGTCGGCGTGAGAAACAAGCAAAATATAATGAAGCACA
GGGCATTGTGCCGCAGGCATTAAATAAAAAGGTAGGCGAGTTGTTAGATATCGGTCAGGGTGCCAATCAGAAAGCCAAAG
CCAATAAACAACGTGGAAAAACGGTGGCAGAACCGACCGCACTTTATACAACGCCGAAATCACCGAAAGAATATCAGCAA
CAGATTAAGAAACTTGAGCAGCAAATGTATAAATTTGCACAGGATTTGGAATTTGAGAAAGCTGCTGCAACGCGCGATCA
GTTACAACAATTACGGGAAAGTTTTATGTTATCAAGTGAGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(640-673)

Type III restriction enzyme, res subunit (ResIII)

(17-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.143

98.824

0.565
  uvrB Streptococcus pneumoniae R6

57.143

98.824

0.565
  uvrB Streptococcus pneumoniae D39

57.143

98.824

0.565