Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LIN93_RS03080 Genome accession   NZ_CP085091
Coordinates   611939..612748 (+) Length   269 a.a.
NCBI ID   WP_005544971.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606939..617748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS03070 - 608298..609143 (-) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  LIN93_RS03075 - 609238..611805 (-) 2568 WP_005566815.1 penicillin-binding protein 1A -
  LIN93_RS03080 comA 611939..612748 (+) 810 WP_005544971.1 hypothetical protein Machinery gene
  LIN93_RS03085 - 612759..613277 (+) 519 WP_025298239.1 PilN domain-containing protein -
  LIN93_RS03090 - 613274..613798 (+) 525 WP_005543969.1 hypothetical protein -
  LIN93_RS03095 - 613798..614190 (+) 393 WP_005544975.1 hypothetical protein -
  LIN93_RS03100 comE 614210..615619 (+) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  LIN93_RS03105 aroK 615833..616360 (+) 528 WP_005555432.1 shikimate kinase AroK -
  LIN93_RS03110 aroB 616384..617472 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31326.94 Da        Isoelectric Point: 6.1096

>NTDB_id=537570 LIN93_RS03080 WP_005544971.1 611939..612748(+) (comA) [Aggregatibacter actinomycetemcomitans strain 30S]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=537570 LIN93_RS03080 WP_005544971.1 611939..612748(+) (comA) [Aggregatibacter actinomycetemcomitans strain 30S]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.541

96.283

0.39
  comA Haemophilus influenzae 86-028NP

40.541

96.283

0.39