Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | I6K93_RS11590 | Genome accession | NZ_CP069951 |
| Coordinates | 2427374..2427883 (+) | Length | 169 a.a. |
| NCBI ID | WP_001831333.1 | Uniprot ID | A0A2G7I1N0 |
| Organism | Staphylococcus epidermidis strain FDAARGOS_1363 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2425861..2443677 | 2427374..2427883 | within | 0 |
Gene organization within MGE regions
Location: 2425861..2443677
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K93_RS11580 (I6K93_11580) | - | 2425861..2426670 (-) | 810 | WP_001831342.1 | GH25 family lysozyme | - |
| I6K93_RS11585 (I6K93_11585) | rpsF | 2427055..2427351 (+) | 297 | WP_001831345.1 | 30S ribosomal protein S6 | - |
| I6K93_RS11590 (I6K93_11590) | ssbA | 2427374..2427883 (+) | 510 | WP_001831333.1 | single-stranded DNA-binding protein | Machinery gene |
| I6K93_RS11595 (I6K93_11595) | rpsR | 2427928..2428170 (+) | 243 | WP_001831354.1 | 30S ribosomal protein S18 | - |
| I6K93_RS11600 (I6K93_11600) | - | 2428316..2429536 (-) | 1221 | WP_049400067.1 | site-specific integrase | - |
| I6K93_RS11605 (I6K93_11605) | - | 2429557..2430099 (-) | 543 | WP_002505296.1 | hypothetical protein | - |
| I6K93_RS11610 (I6K93_11610) | - | 2430147..2430680 (-) | 534 | WP_002505295.1 | Ltp family lipoprotein | - |
| I6K93_RS11615 (I6K93_11615) | - | 2430819..2431610 (-) | 792 | WP_002505294.1 | helix-turn-helix transcriptional regulator | - |
| I6K93_RS11620 (I6K93_11620) | - | 2431745..2431948 (+) | 204 | WP_002445790.1 | helix-turn-helix domain-containing protein | - |
| I6K93_RS11625 (I6K93_11625) | - | 2431984..2432256 (+) | 273 | WP_002505293.1 | helix-turn-helix domain-containing protein | - |
| I6K93_RS11630 (I6K93_11630) | - | 2432407..2432634 (+) | 228 | WP_002505292.1 | hypothetical protein | - |
| I6K93_RS11635 (I6K93_11635) | - | 2432618..2432929 (+) | 312 | WP_002485637.1 | DUF1474 family protein | - |
| I6K93_RS11640 (I6K93_11640) | - | 2433018..2433890 (+) | 873 | WP_002505291.1 | primase alpha helix C-terminal domain-containing protein | - |
| I6K93_RS11645 (I6K93_11645) | - | 2433905..2435614 (+) | 1710 | WP_002505290.1 | DUF927 domain-containing protein | - |
| I6K93_RS11650 (I6K93_11650) | - | 2435944..2436309 (+) | 366 | WP_002505289.1 | hypothetical protein | - |
| I6K93_RS11655 (I6K93_11655) | - | 2436323..2436964 (+) | 642 | WP_049400062.1 | pathogenicity island protein | - |
| I6K93_RS11660 (I6K93_11660) | - | 2437300..2437638 (+) | 339 | WP_002438931.1 | hypothetical protein | - |
| I6K93_RS11665 (I6K93_11665) | - | 2437651..2438184 (+) | 534 | WP_049389852.1 | hypothetical protein | - |
| I6K93_RS11670 (I6K93_11670) | - | 2438204..2438890 (+) | 687 | WP_049389853.1 | hypothetical protein | - |
| I6K93_RS11675 (I6K93_11675) | - | 2438950..2439516 (+) | 567 | WP_049400059.1 | terminase small subunit | - |
| I6K93_RS11680 (I6K93_11680) | - | 2439688..2440002 (+) | 315 | WP_002487916.1 | hypothetical protein | - |
| I6K93_RS11685 (I6K93_11685) | - | 2440015..2441328 (+) | 1314 | WP_002487938.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6K93_RS11690 (I6K93_11690) | - | 2441452..2441748 (+) | 297 | WP_002487933.1 | hypothetical protein | - |
| I6K93_RS12160 | - | 2442664..2442827 (-) | 164 | Protein_2266 | XRE family transcriptional regulator | - |
| I6K93_RS11695 (I6K93_11695) | - | 2442941..2443201 (-) | 261 | WP_001830921.1 | hypothetical protein | - |
| I6K93_RS11700 (I6K93_11700) | - | 2443423..2443677 (+) | 255 | WP_001832461.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18680.20 Da Isoelectric Point: 4.9056
>NTDB_id=537540 I6K93_RS11590 WP_001831333.1 2427374..2427883(+) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1363]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=537540 I6K93_RS11590 WP_001831333.1 2427374..2427883(+) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1363]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.607 |
100 |
0.68 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.172 |
100 |
0.568 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
62.722 |
0.379 |