Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LIO32_RS02185 Genome accession   NZ_CP085087
Coordinates   433268..433918 (+) Length   216 a.a.
NCBI ID   WP_023371212.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 428268..438918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS02170 - 428747..429076 (+) 330 WP_226960426.1 hypothetical protein -
  LIO32_RS02175 - 429143..431869 (+) 2727 WP_226960427.1 serum opacification factor -
  LIO32_RS02180 - 432335..433036 (-) 702 WP_023371214.1 CPBP family intramembrane glutamic endopeptidase -
  LIO32_RS02185 scnR 433268..433918 (+) 651 WP_023371212.1 response regulator transcription factor Regulator
  LIO32_RS02190 - 433920..435308 (+) 1389 WP_023371210.1 HAMP domain-containing sensor histidine kinase -
  LIO32_RS02195 - 435750..436301 (+) 552 WP_023371208.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LIO32_RS02200 - 436510..437418 (-) 909 WP_002936272.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24742.85 Da        Isoelectric Point: 4.7792

>NTDB_id=537290 LIO32_RS02185 WP_023371212.1 433268..433918(+) (scnR) [Streptococcus suis strain Ssuis_MA2]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=537290 LIO32_RS02185 WP_023371212.1 433268..433918(+) (scnR) [Streptococcus suis strain Ssuis_MA2]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGCGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38