Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LIO34_RS05185 Genome accession   NZ_CP085085
Coordinates   1015722..1016420 (+) Length   232 a.a.
NCBI ID   WP_002935052.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010722..1021420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS05165 - 1011523..1014303 (-) 2781 WP_024394871.1 type 2 lanthipeptide synthetase LanM family protein -
  LIO34_RS05170 - 1014322..1014489 (-) 168 WP_074391117.1 lacticin 481 family lantibiotic -
  LIO34_RS05175 - 1015028..1015183 (-) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  LIO34_RS05180 - 1015212..1015367 (-) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  LIO34_RS05185 scnR 1015722..1016420 (+) 699 WP_002935052.1 response regulator transcription factor Regulator
  LIO34_RS05190 - 1016436..1017791 (+) 1356 WP_002935054.1 sensor histidine kinase KdpD -
  LIO34_RS05195 - 1017914..1019773 (-) 1860 WP_024394872.1 SAG1250 family conjugative relaxase -
  LIO34_RS05200 mobC 1019760..1020125 (-) 366 WP_018163914.1 plasmid mobilization relaxosome protein MobC -
  LIO34_RS05205 - 1020135..1020494 (-) 360 WP_002935059.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26300.45 Da        Isoelectric Point: 5.1495

>NTDB_id=537117 LIO34_RS05185 WP_002935052.1 1015722..1016420(+) (scnR) [Streptococcus suis strain Ssuis_MA8]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFTNKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=537117 LIO34_RS05185 WP_002935052.1 1015722..1016420(+) (scnR) [Streptococcus suis strain Ssuis_MA8]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTACCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

38.428

98.707

0.379
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371