Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6K90_RS11805 Genome accession   NZ_CP069840
Coordinates   2433917..2434390 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain FDAARGOS_1360     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2428917..2439390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K90_RS11790 (I6K90_11790) pilX 2431546..2432364 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6K90_RS11795 (I6K90_11795) pilW 2432361..2433362 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  I6K90_RS11800 (I6K90_11800) pilV 2433363..2433923 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  I6K90_RS11805 (I6K90_11805) fimU 2433917..2434390 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6K90_RS11810 (I6K90_11810) ispH 2434560..2435510 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6K90_RS11815 (I6K90_11815) gmk 2435633..2436262 (+) 630 WP_000015937.1 guanylate kinase -
  I6K90_RS11820 (I6K90_11820) rpoZ 2436335..2436613 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I6K90_RS11825 (I6K90_11825) - 2436652..2436782 (+) 131 Protein_2328 hypothetical protein -
  I6K90_RS11830 (I6K90_11830) - 2436822..2438927 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=536977 I6K90_RS11805 WP_001214060.1 2433917..2434390(-) (fimU) [Acinetobacter baumannii strain FDAARGOS_1360]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=536977 I6K90_RS11805 WP_001214060.1 2433917..2434390(-) (fimU) [Acinetobacter baumannii strain FDAARGOS_1360]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987