Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LIO20_RS02500 Genome accession   NZ_CP085082
Coordinates   549435..550160 (-) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain PAO1-Holloway     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544435..555160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO20_RS02475 (LIO20_02475) - 544908..545423 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  LIO20_RS02480 (LIO20_02480) rarD 546113..547009 (-) 897 WP_003103301.1 EamA family transporter RarD -
  LIO20_RS02485 (LIO20_02485) - 547211..548185 (-) 975 WP_003113256.1 serine/threonine protein kinase -
  LIO20_RS02490 (LIO20_02490) - 548247..549005 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  LIO20_RS02495 (LIO20_02495) - 549073..549393 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  LIO20_RS02500 (LIO20_02500) comF 549435..550160 (-) 726 WP_003103309.1 ComF family protein Machinery gene
  LIO20_RS02505 (LIO20_02505) - 550299..550592 (-) 294 WP_003113255.1 hypothetical protein -
  LIO20_RS02510 (LIO20_02510) - 550646..551572 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  LIO20_RS02515 (LIO20_02515) - 551690..552448 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  LIO20_RS02520 (LIO20_02520) - 552525..552773 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  LIO20_RS02525 (LIO20_02525) - 552784..554160 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  LIO20_RS02530 (LIO20_02530) - 554162..555040 (+) 879 WP_003113253.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=536976 LIO20_RS02500 WP_003103309.1 549435..550160(-) (comF) [Pseudomonas aeruginosa strain PAO1-Holloway]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=536976 LIO20_RS02500 WP_003103309.1 549435..550160(-) (comF) [Pseudomonas aeruginosa strain PAO1-Holloway]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382