Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6K90_RS11790 Genome accession   NZ_CP069840
Coordinates   2431546..2432364 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain FDAARGOS_1360     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2426546..2437364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K90_RS11775 (I6K90_11775) pilE 2426765..2427190 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  I6K90_RS11780 (I6K90_11780) pilY2 2427187..2427669 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  I6K90_RS11785 (I6K90_11785) pilY1 2427680..2431534 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  I6K90_RS11790 (I6K90_11790) pilX 2431546..2432364 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6K90_RS11795 (I6K90_11795) pilW 2432361..2433362 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  I6K90_RS11800 (I6K90_11800) pilV 2433363..2433923 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  I6K90_RS11805 (I6K90_11805) fimU 2433917..2434390 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6K90_RS11810 (I6K90_11810) ispH 2434560..2435510 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6K90_RS11815 (I6K90_11815) gmk 2435633..2436262 (+) 630 WP_000015937.1 guanylate kinase -
  I6K90_RS11820 (I6K90_11820) rpoZ 2436335..2436613 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I6K90_RS11825 (I6K90_11825) - 2436652..2436782 (+) 131 Protein_2328 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=536974 I6K90_RS11790 WP_000149374.1 2431546..2432364(-) (pilX) [Acinetobacter baumannii strain FDAARGOS_1360]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=536974 I6K90_RS11790 WP_000149374.1 2431546..2432364(-) (pilX) [Acinetobacter baumannii strain FDAARGOS_1360]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993