Detailed information NTG0536875

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JTE92_RS27780
• Genome accession: NZ_CP069812
• Coordinates: 3329117..3330019 (+)
• Length: 300 a.a.
• NCBI ID: WP_063241556.1
• Uniprot ID: -
• Organism: Cupriavidus oxalaticus strain Ox1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3324117..3335019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JTE92_RS27755 (JTE92_27755)	-	3324353..3324646 (-)	294	WP_063241560.1	hypothetical protein	-
JTE92_RS27760 (JTE92_27760)	ispB	3324645..3325574 (+)	930	WP_063241559.1	octaprenyl diphosphate synthase	-
JTE92_RS27770 (JTE92_27770)	pilF	3325984..3327762 (+)	1779	WP_063241558.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
JTE92_RS27775 (JTE92_27775)	-	3327842..3329113 (+)	1272	WP_063241557.1	type II secretion system F family protein	-
JTE92_RS27780 (JTE92_27780)	pilD	3329117..3330019 (+)	903	WP_063241556.1	A24 family peptidase	Machinery gene
JTE92_RS27785 (JTE92_27785)	coaE	3330071..3330709 (+)	639	WP_063241555.1	dephospho-CoA kinase	-
JTE92_RS27790 (JTE92_27790)	zapD	3330947..3331705 (+)	759	WP_063241554.1	cell division protein ZapD	-
JTE92_RS27795 (JTE92_27795)	-	3331710..3331901 (+)	192	WP_029048086.1	DNA gyrase inhibitor YacG	-
JTE92_RS27800 (JTE92_27800)	-	3331955..3332392 (-)	438	WP_063241553.1	NUDIX domain-containing protein	-
JTE92_RS27805 (JTE92_27805)	-	3332389..3333306 (-)	918	WP_063241552.1	ATP-binding protein	-
JTE92_RS27810 (JTE92_27810)	argJ	3333367..3334605 (-)	1239	WP_063241551.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 32046.26 Da
• Isoelectric Point: 8.3382

>NTDB_id=536875 JTE92_RS27780 WP_063241556.1 3329117..3330019(+) (pilD) [Cupriavidus oxalaticus strain Ox1]
MALAYSVSPFPAGSDQLLQALAVLPPAFMVAVTAVLGLVVGSFLNVVIHRLPRMMEREEANYIAELRGDPLPYPARYNLM
VPRSACPHCGHAIAPWENVPVLSWLALRGRCSACKARISARYPLVELACGVLSALVAWRFGPGVQALAALVLVWALLALT
LIDADTQLLPDQITLPLLWLGLVLNLGGLFVPLADAVIGAAAGYLVLWTAYWLFRLVRGKEGMGFGDFKLMAALGAWFGW
QALPALVLLSSVAGVAFGLASIALRRQDRDTPFPFGPFIALAGLVVLVFGSGVLPLTLLP

Nucleotide

• Length: 903 bp

>NTDB_id=536875 JTE92_RS27780 WP_063241556.1 3329117..3330019(+) (pilD) [Cupriavidus oxalaticus strain Ox1]
ATGGCGCTGGCGTATTCCGTTTCGCCGTTTCCCGCAGGCAGCGATCAATTGCTGCAGGCGCTGGCGGTGCTGCCGCCTGC
CTTCATGGTGGCGGTGACGGCCGTGCTCGGCCTGGTGGTGGGCAGTTTCCTCAACGTGGTGATCCACCGGCTGCCGCGCA
TGATGGAGCGCGAGGAAGCCAACTATATCGCCGAGCTGCGCGGCGATCCGCTGCCCTACCCCGCCCGCTACAACCTGATG
GTGCCGCGCTCGGCCTGTCCGCACTGCGGCCACGCGATCGCGCCCTGGGAAAACGTGCCGGTGCTGAGCTGGCTGGCGCT
GCGCGGGCGCTGCTCGGCCTGCAAGGCCCGGATCAGCGCACGCTATCCGCTGGTGGAGCTGGCCTGCGGCGTGCTGAGCG
CGCTGGTGGCGTGGCGCTTCGGCCCTGGCGTGCAGGCCTTGGCGGCACTGGTGCTGGTCTGGGCGCTGCTGGCGCTGACC
CTGATCGATGCCGATACCCAGTTGCTGCCGGACCAGATCACGCTGCCGCTGCTGTGGCTGGGACTGGTGCTGAACCTGGG
CGGGTTGTTCGTGCCGCTGGCCGACGCCGTGATCGGCGCCGCCGCCGGCTACCTGGTGCTGTGGACGGCGTACTGGCTGT
TCCGGCTGGTGCGTGGCAAGGAGGGCATGGGTTTCGGCGACTTCAAGCTGATGGCGGCACTCGGGGCGTGGTTTGGCTGG
CAGGCGCTGCCGGCGCTGGTGCTGCTGTCATCGGTGGCCGGTGTGGCGTTCGGGCTGGCCAGCATCGCACTGCGCCGGCA
GGATCGCGACACGCCCTTCCCTTTCGGCCCCTTTATCGCGCTGGCGGGCCTGGTGGTGCTGGTGTTCGGCTCCGGCGTGC
TGCCGCTGACCTTGCTGCCTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (150-259)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (35-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.779	90.667	0.497
pilD	Vibrio campbellii strain DS40M4	51.825	91.333	0.473
pilD	Neisseria gonorrhoeae MS11	48.921	92.667	0.453
pilD	Acinetobacter baumannii D1279779	46.715	91.333	0.427
pilD	Acinetobacter nosocomialis M2	46.35	91.333	0.423