Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C270_RS07430 Genome accession   NC_018673
Coordinates   1513169..1513717 (-) Length   182 a.a.
NCBI ID   WP_014974956.1    Uniprot ID   A0AAE6IL22
Organism   Leuconostoc carnosum JB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1508169..1518717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS07410 (C270_07165) dnaB 1508605..1510071 (-) 1467 WP_014974952.1 replicative DNA helicase -
  C270_RS07415 (C270_07170) rplI 1510073..1510525 (-) 453 WP_014974953.1 50S ribosomal protein L9 -
  C270_RS07420 (C270_07175) - 1510577..1512604 (-) 2028 WP_014974954.1 DHH family phosphoesterase -
  C270_RS07425 (C270_07180) rpsR 1512848..1513132 (-) 285 WP_014974955.1 30S ribosomal protein S18 -
  C270_RS07430 (C270_07185) ssb 1513169..1513717 (-) 549 WP_014974956.1 single-stranded DNA-binding protein Machinery gene
  C270_RS07435 (C270_07190) rpsF 1513751..1514047 (-) 297 WP_014974957.1 30S ribosomal protein S6 -
  C270_RS07440 (C270_07195) - 1514234..1515682 (-) 1449 WP_014974958.1 Sapep family Mn(2+)-dependent dipeptidase -
  C270_RS07445 (C270_07200) - 1515737..1516561 (-) 825 WP_014974959.1 energy-coupling factor transporter transmembrane component T -
  C270_RS07450 (C270_07205) - 1516616..1518310 (-) 1695 WP_014974960.1 DUF3744 domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19751.36 Da        Isoelectric Point: 4.5280

>NTDB_id=53680 C270_RS07430 WP_014974956.1 1513169..1513717(-) (ssb) [Leuconostoc carnosum JB16]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFSNFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSTPSNNGGNFGAPSDNSFSGVDPFASANQNSNSQSTATTQND
APNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=53680 C270_RS07430 WP_014974956.1 1513169..1513717(-) (ssb) [Leuconostoc carnosum JB16]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGACGTGGAATTGCGCTATACGCAATCAGGTACAGCTGTTGG
GACATTTAGTCTCGCAGTTAACCGCCAATTTACTAACCAAGCTGGTGAGCGGGAAGCTGACTTTATTAACGCTGTTATCT
GGCGTAAAGCAGCTGAAAATTTCTCGAATTTTACTGGTAAAGGTGCTTTGGTAGCCGTTGAAGGCCGATTGCAAACAAGA
AATTATGAAAATAATCAAGGTCAACGTGTTTACGTTACCGAAGTTGTTGTAGATAATTTCTCATTGCTTGAATCACGCGC
TGAAAGTGAGAAACGTCGTTCACAAAACGGCTCATCAACACCATCTAACAATGGTGGCAACTTTGGTGCACCAAGTGATA
ATTCATTTAGTGGTGTTGATCCATTTGCAAGTGCGAACCAAAATTCAAACTCACAATCGACAGCAACGACACAAAATGAT
GCACCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.516

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.747

100

0.527

Multiple sequence alignment