Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JQU52_RS07305 Genome accession   NZ_CP069798
Coordinates   1408056..1410176 (+) Length   706 a.a.
NCBI ID   WP_230340452.1    Uniprot ID   A0A892ZN27
Organism   Paralysiella testudinis strain 26B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403056..1415176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS07285 (JQU52_07305) pilM 1405152..1406252 (+) 1101 WP_230340449.1 type IV pilus biogenesis protein PilM -
  JQU52_RS07290 (JQU52_07310) - 1406300..1406842 (+) 543 WP_230340450.1 PilN domain-containing protein -
  JQU52_RS07295 (JQU52_07315) - 1406861..1407484 (+) 624 WP_230340451.1 type 4a pilus biogenesis protein PilO -
  JQU52_RS07300 (JQU52_07320) - 1407459..1408034 (+) 576 WP_328301340.1 pilus assembly protein PilP -
  JQU52_RS07305 (JQU52_07325) pilQ 1408056..1410176 (+) 2121 WP_230340452.1 type IV pilus secretin PilQ Machinery gene
  JQU52_RS07310 (JQU52_07330) - 1410244..1410798 (+) 555 WP_230340453.1 shikimate kinase -
  JQU52_RS07315 (JQU52_07335) aroB 1410779..1411864 (+) 1086 WP_230340454.1 3-dehydroquinate synthase -
  JQU52_RS07320 (JQU52_07340) speB 1411890..1412858 (+) 969 WP_230340455.1 agmatinase -
  JQU52_RS07325 (JQU52_07345) - 1413179..1414150 (+) 972 WP_230340456.1 calcium/sodium antiporter -
  JQU52_RS07330 (JQU52_07350) - 1414284..1414757 (-) 474 WP_230340457.1 hypothetical protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 76509.02 Da        Isoelectric Point: 9.3551

>NTDB_id=536752 JQU52_RS07305 WP_230340452.1 1408056..1410176(+) (pilQ) [Paralysiella testudinis strain 26B]
MKFKTMTIMSALGLGLLGQAAWAGNITGINVSALPNNQKVIKIQFDRDVTAPSGFITPSPARIALDFANTGLQLPQSVLE
YNDPLLKQIAAAQSADRSRLMLSLAQPGEYKTEIKGNEVWVYVQESTAAPAAAPAVVRTPPVAAVTEVRTETVYTPAPKS
TSAANTPIGVDFRKGANNSGLVEINIGNYSGQPEIKRQADRLMITYKNAPLPTEQQRDLDVTDFSTPVRTIALRRLGNDT
QLTIRMQGNWTFRPSGSGSRQTIEISPQVDMASSGLKPQQKSFAGKRVSLDFQDVEVRTILQILAKESGMNIVASDSVQG
KMTISLKDVPWDQALDLVMQARNLDMRKQGNIINIAPREELLNKDKATLQAQNEIENLGPLVSQTFQLKYKSAEEFRKVL
NISDNNSNSNDRNSILTARGSALIDPATNTLIITDTPNIIQKFEKLVAQLDVPSQQVMVEARIVEAQDGFSRELGVRFGG
GYRNVNGTNSTTVGGLASGALGSFGDSRFGIPNVNLPVSSPTSALSLIRSTASGALGLELQAMQEENRGKIISSPRVLTQ
DRKEAVIESGKEVPYQEASSSGATTTSFKKAVLGLTVTPQITPDGNVIMDVVVKKDSVDLSCSAYAPCINTKNLNTRAMV
EDGGTLILGGIYEEDNSNIDRKVPLLGDIPVLGNLFKYQKRNQRRNELLIFITPRIMGNAGSNLRY

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=536752 JQU52_RS07305 WP_230340452.1 1408056..1410176(+) (pilQ) [Paralysiella testudinis strain 26B]
ATGAAATTCAAAACCATGACAATTATGTCTGCCTTAGGACTGGGTTTGCTGGGTCAGGCAGCATGGGCAGGCAACATCAC
CGGCATCAATGTTTCGGCCTTACCAAACAACCAAAAAGTCATCAAAATCCAATTTGATCGTGATGTTACCGCCCCCAGCG
GCTTCATTACCCCCAGTCCGGCGCGCATCGCCTTGGATTTTGCCAATACCGGCTTGCAATTGCCACAGTCGGTATTGGAA
TACAATGATCCTTTGCTTAAACAGATTGCTGCGGCGCAAAGTGCGGATCGTTCGCGCTTAATGTTGTCGTTGGCGCAGCC
CGGTGAATATAAAACCGAAATCAAGGGCAATGAAGTATGGGTGTATGTGCAGGAATCGACCGCAGCACCTGCGGCTGCCC
CGGCAGTAGTGCGTACTCCGCCCGTAGCTGCGGTAACTGAAGTGCGCACCGAAACCGTATACACCCCTGCACCTAAAAGC
ACCTCTGCTGCCAATACCCCCATCGGTGTTGACTTCCGTAAGGGTGCCAACAACAGCGGCTTGGTGGAAATCAATATCGG
CAATTATAGTGGACAGCCGGAGATCAAACGTCAGGCTGACCGTTTGATGATTACTTATAAAAATGCGCCGCTGCCCACCG
AGCAGCAGCGCGATCTGGATGTGACTGATTTCAGCACTCCGGTACGCACCATTGCCTTGCGCCGCTTAGGCAACGACACT
CAGCTGACCATACGCATGCAAGGCAACTGGACTTTCCGCCCTTCTGGCAGCGGCAGCCGTCAAACCATCGAAATTTCACC
GCAAGTGGATATGGCCAGCAGCGGCCTGAAGCCACAACAAAAATCTTTTGCCGGCAAACGCGTATCTTTGGATTTCCAAG
ATGTGGAAGTACGCACCATTTTGCAGATTTTGGCCAAAGAGTCGGGCATGAATATTGTGGCCAGCGATAGCGTGCAAGGC
AAAATGACCATTTCACTGAAAGATGTGCCGTGGGATCAGGCATTGGACTTGGTGATGCAGGCTCGCAATCTGGATATGCG
CAAGCAGGGCAATATCATCAATATTGCGCCGCGTGAAGAGTTACTCAATAAAGACAAAGCCACCTTGCAAGCACAAAATG
AGATTGAAAATTTAGGGCCTTTGGTATCGCAAACTTTCCAGCTGAAATACAAAAGTGCGGAAGAATTCCGCAAAGTGTTA
AATATCAGTGATAACAATAGTAACAGCAATGATCGCAACTCAATATTGACCGCTCGCGGCAGTGCCTTGATAGATCCGGC
CACCAATACACTGATTATTACCGATACCCCCAATATTATTCAGAAATTTGAAAAATTGGTGGCTCAGTTGGACGTGCCTT
CGCAACAAGTAATGGTAGAGGCGCGGATTGTGGAGGCACAGGATGGTTTTTCGCGTGAGCTAGGTGTGCGGTTTGGCGGC
GGTTATCGCAATGTTAATGGCACCAACAGCACTACTGTAGGTGGCTTGGCCAGTGGTGCATTAGGTAGTTTCGGCGATAG
TCGATTCGGTATTCCCAATGTCAATTTGCCGGTAAGCTCCCCAACATCCGCCTTGTCATTAATTCGCAGTACGGCATCGG
GCGCACTGGGCTTGGAACTGCAAGCCATGCAAGAAGAAAACCGTGGCAAAATTATTTCCAGCCCGCGAGTGCTGACACAA
GATCGTAAAGAGGCAGTTATTGAATCCGGTAAAGAAGTGCCTTATCAAGAAGCCTCCTCCAGTGGCGCCACCACTACCAG
CTTTAAAAAAGCAGTACTGGGTTTAACCGTTACGCCGCAAATCACGCCTGATGGCAATGTGATTATGGATGTGGTGGTGA
AAAAAGATTCGGTTGATTTATCTTGCTCTGCTTACGCGCCATGTATCAATACCAAAAACCTCAATACACGGGCGATGGTG
GAAGATGGAGGTACGCTGATTTTGGGTGGTATTTATGAAGAAGATAACTCCAATATTGATCGCAAAGTGCCTTTGCTGGG
TGATATCCCGGTGCTAGGTAATTTGTTTAAATATCAAAAACGCAATCAAAGGCGCAATGAATTGCTGATTTTCATCACCC
CGCGCATTATGGGTAATGCCGGCAGTAATTTGCGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(542-697)

Bacterial type II/III secretion system short domain (Secretin_N)

(384-456)

Secretin and TonB N terminus short domain (STN)

(311-357)

AMIN domain (AMIN)

(37-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

53.444

100

0.55
  pilQ Neisseria meningitidis MC58

57.875

77.337

0.448
  pilQ Neisseria meningitidis M1080

57.875

77.337

0.448