Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   JR441_RS19145 Genome accession   NZ_CP069789
Coordinates   3728993..3729112 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain BIM B-569G     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723993..3734112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS19125 (JR441_19125) albG 3724156..3724857 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  JR441_RS19130 (JR441_19130) ywhL 3724863..3726239 (-) 1377 WP_198878427.1 YncE family protein -
  JR441_RS19135 (JR441_19135) ywhK 3726279..3727634 (-) 1356 WP_069322965.1 YncE family protein -
  JR441_RS21165 - 3727631..3727861 (-) 231 WP_326256832.1 hypothetical protein -
  JR441_RS19140 (JR441_19140) rapF 3727864..3729009 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  JR441_RS19145 (JR441_19145) phrF 3728993..3729112 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  JR441_RS19150 (JR441_19150) ywhH 3729228..3729676 (+) 449 Protein_3742 YbaK/EbsC family protein -
  JR441_RS19155 (JR441_19155) speB 3729707..3730579 (-) 873 WP_198878426.1 agmatinase -
  JR441_RS19160 (JR441_19160) speE 3730640..3731470 (-) 831 WP_003227543.1 spermidine synthase -
  JR441_RS19165 (JR441_19165) pbpG 3731672..3733747 (+) 2076 WP_046664002.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=536648 JR441_RS19145 WP_009968329.1 3728993..3729112(+) (phrF) [Bacillus subtilis strain BIM B-569G]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=536648 JR441_RS19145 WP_009968329.1 3728993..3729112(+) (phrF) [Bacillus subtilis strain BIM B-569G]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487