Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JR441_RS18070 Genome accession   NZ_CP069789
Coordinates   3516742..3517464 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3511742..3522464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS18035 (JR441_18035) fliW 3511882..3512313 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  JR441_RS18040 (JR441_18040) yviE 3512334..3512909 (-) 576 WP_198878463.1 DUF6470 family protein -
  JR441_RS18045 (JR441_18045) flgL 3512956..3513852 (-) 897 WP_106073351.1 flagellar hook-associated protein FlgL -
  JR441_RS18050 (JR441_18050) flgK 3513863..3515386 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  JR441_RS18055 (JR441_18055) flgN 3515405..3515887 (-) 483 WP_014481048.1 flagellar protein FlgN -
  JR441_RS18060 (JR441_18060) flgM 3515903..3516169 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  JR441_RS18065 (JR441_18065) yvyF 3516250..3516669 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JR441_RS18070 (JR441_18070) comFC 3516742..3517464 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  JR441_RS18075 (JR441_18075) comFB 3517428..3517724 (-) 297 WP_015483764.1 late competence protein ComFB -
  JR441_RS18080 (JR441_18080) comFA 3517784..3519175 (-) 1392 WP_198878462.1 ATP-dependent helicase ComFA Machinery gene
  JR441_RS18085 (JR441_18085) fakBA 3519281..3520126 (-) 846 WP_003244125.1 DegV family protein -
  JR441_RS18090 (JR441_18090) degU 3520224..3520913 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JR441_RS18095 (JR441_18095) degS 3520996..3522153 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=536640 JR441_RS18070 WP_029725992.1 3516742..3517464(-) (comFC) [Bacillus subtilis strain BIM B-569G]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=536640 JR441_RS18070 WP_029725992.1 3516742..3517464(-) (comFC) [Bacillus subtilis strain BIM B-569G]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983