Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JR441_RS12800 Genome accession   NZ_CP069789
Coordinates   2503558..2504175 (-) Length   205 a.a.
NCBI ID   WP_198878617.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2498558..2509175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS12770 (JR441_12770) rpsT 2498860..2499126 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  JR441_RS12775 (JR441_12775) holA 2499141..2500184 (-) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  JR441_RS12780 (JR441_12780) - 2500224..2500373 (-) 150 WP_003229985.1 hypothetical protein -
  JR441_RS12785 (JR441_12785) yqzM 2500414..2500548 (+) 135 WP_003229983.1 YqzM family protein -
  JR441_RS12790 (JR441_12790) comEC 2500588..2502918 (-) 2331 WP_198878618.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JR441_RS12795 (JR441_12795) comEB 2502922..2503491 (-) 570 WP_003229978.1 ComE operon protein 2 -
  JR441_RS12800 (JR441_12800) comEA 2503558..2504175 (-) 618 WP_198878617.1 competence protein ComEA Machinery gene
  JR441_RS12805 (JR441_12805) comER 2504259..2505080 (+) 822 WP_014480313.1 late competence protein ComER -
  JR441_RS12810 (JR441_12810) yqeM 2505146..2505889 (-) 744 WP_198878616.1 class I SAM-dependent methyltransferase -
  JR441_RS12815 (JR441_12815) rsfS 2505886..2506242 (-) 357 WP_014480315.1 ribosome silencing factor -
  JR441_RS12820 (JR441_12820) yqeK 2506260..2506820 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JR441_RS12825 (JR441_12825) nadD 2506810..2507379 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  JR441_RS12830 (JR441_12830) yhbY 2507391..2507681 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  JR441_RS12835 (JR441_12835) aroE 2507675..2508517 (-) 843 WP_076458133.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21839.63 Da        Isoelectric Point: 4.9739

>NTDB_id=536626 JR441_RS12800 WP_198878617.1 2503558..2504175(-) (comEA) [Bacillus subtilis strain BIM B-569G]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESSETIVIDIKGAVKHPGVYEMRT
GDRVSQAIEKAGGTKEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGTGGSVQSDGGKGPLVNINTATLEELQGISGV
GPSKAEAIVAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=536626 JR441_RS12800 WP_198878617.1 2503558..2504175(-) (comEA) [Bacillus subtilis strain BIM B-569G]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTAAGCATCCAGGCGTTTATGAAATGCGTACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCAGGCGGGACCAAAGAACAAGCAGACGAAGCGCAAGTAAATTTGGCCGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTACCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGACCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCGGGGGTG
GGGCCATCCAAAGCTGAAGCTATTGTTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.073

100

0.971
  comEA Staphylococcus aureus MW2

37.727

100

0.405
  comEA Staphylococcus aureus N315

37.273

100

0.4