Detailed information NTG0536471

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LH646_RS22865
• Genome accession: NZ_CP085039
• Coordinates: 5258659..5259732 (+)
• Length: 357 a.a.
• NCBI ID: WP_030696310.1
• Uniprot ID: A0A7Y6F220
• Organism: Streptomyces sp. WA1-19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5253659..5264732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LH646_RS22855 (LH646_22855)	-	5255192..5256454 (+)	1263	WP_030696312.1	NAD(P)/FAD-dependent oxidoreductase	-
LH646_RS22860 (LH646_22860)	dnaG	5256575..5258479 (+)	1905	WP_030696311.1	DNA primase	-
LH646_RS22865 (LH646_22865)	rpoS	5258659..5259732 (+)	1074	WP_030696310.1	RNA polymerase sigma factor	Regulator
LH646_RS22870 (LH646_22870)	-	5259752..5260024 (-)	273	WP_217685048.1	hypothetical protein	-
LH646_RS22875 (LH646_22875)	rcrQ	5260059..5261975 (-)	1917	WP_175457000.1	ABC transporter ATP-binding protein	Regulator
LH646_RS22880 (LH646_22880)	rcrP	5261975..5263708 (-)	1734	WP_047465456.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38771.30 Da
• Isoelectric Point: 10.3517

>NTDB_id=536471 LH646_RS22865 WP_030696310.1 5258659..5259732(+) (rpoS) [Streptomyces sp. WA1-19]
MQTRPPRSAPTAPPAVLAPAVPTPRRSPQRAPAGGAGTGPQGAGGRTPAGSEQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAGGSADPALAHDLRRLVALGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSGEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERIRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide

• Length: 1074 bp

>NTDB_id=536471 LH646_RS22865 WP_030696310.1 5258659..5259732(+) (rpoS) [Streptomyces sp. WA1-19]
GTGCAGACCAGGCCCCCTCGCTCCGCCCCCACCGCCCCGCCCGCGGTCCTCGCCCCGGCCGTGCCCACCCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGACGCCGGCCGGTTCCGAGCAGG
CCGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCCGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTGGAGGCGGGCGTGTTCGCCGCCGCGAAACTGGCCGGGGGCTCGGCGGACCCGGCGCTCGC
CCACGACCTGCGGCGGCTGGTGGCCCTCGGGGAGCGGGCCAAGGGACGGCTCATCGAGGCCAACCTCAGGCTCGTCGTCT
CGGTGGCCAAGCGGTACACGGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAACCTCGGACTGATCCGCGCG
GTGGAGAAGTTCGACTACACGCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTCCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGCCGCGAGCCGGCCGCCGAGGAGGTCGGCGAGCGGCTCGGGCTGAGTGGCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGCGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGATCCGCCAGATCGAGTCGAAGACCCTGCGCCGGCTCCGCGAGCACAC
GGCGGCGGGGCAGTTGCGGGGCTACCTGGAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (60-93)

• Sigma-70, region 4 (Sigma70_r4) (292-345)

• Sigma-70 region 2 (Sigma70_r2) (124-193)

• Sigma-70 region 3 (Sigma70_r3) (203-279)

3D structure

• AlphaFold DB: A0A7Y6F220

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	44.521	81.793	0.364