Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LH646_RS22880 Genome accession   NZ_CP085039
Coordinates   5261975..5263708 (-) Length   577 a.a.
NCBI ID   WP_047465456.1    Uniprot ID   A0A7Y6F145
Organism   Streptomyces sp. WA1-19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5256975..5268708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS22865 (LH646_22865) rpoS 5258659..5259732 (+) 1074 WP_030696310.1 RNA polymerase sigma factor Regulator
  LH646_RS22870 (LH646_22870) - 5259752..5260024 (-) 273 WP_217685048.1 hypothetical protein -
  LH646_RS22875 (LH646_22875) rcrQ 5260059..5261975 (-) 1917 WP_175457000.1 ABC transporter ATP-binding protein Regulator
  LH646_RS22880 (LH646_22880) rcrP 5261975..5263708 (-) 1734 WP_047465456.1 ABC transporter ATP-binding protein Regulator
  LH646_RS22885 (LH646_22885) - 5263841..5265295 (-) 1455 WP_226965179.1 xylulokinase -
  LH646_RS22890 (LH646_22890) - 5265400..5265699 (-) 300 WP_030696305.1 hypothetical protein -
  LH646_RS22910 (LH646_22910) - 5266720..5267964 (-) 1245 WP_226965180.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62626.84 Da        Isoelectric Point: 5.6287

>NTDB_id=536473 LH646_RS22880 WP_047465456.1 5261975..5263708(-) (rcrP) [Streptomyces sp. WA1-19]
MLIRLLRTYLRPYQKPIALVMVLQLLQTCAALYLPSLNADIIDRGVVRGDTGVILGLGAVMLAVTLVQTAGNIGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELNGFGAPSLITRTTNDVQQVQMLALMTFTLMVTAPIMCVGGVIMALGQDVPLSGV
LLAVLPVMAASVGVVVWRLRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDRYETERFGRANTDLTEVSLGTGRLLAL
MFPLVMLVVNLSSLAVVWFGAHRIDSGAMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PAEPVRELAGRGTLEMRAAGFRYPGAEEWVLRDVELFAGPGETTAVIGSTGSGKTTLLGLAARLIDPVEGEVLVDGVDIR
RIDPALLARTVGLVPQKPYLFSGTVASNLRYGNPEASDEELWHALEVAQAREFVERLEGGLQAPVSQGGTNVSGGQRQRL
AIARTLVQRPEVYLFDDSFSALDYATDAALRAALRAETAEAGVVIVAQRVSTIRDADRIVVLDEGRVVAVGRHHDLMERD
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=536473 LH646_RS22880 WP_047465456.1 5261975..5263708(-) (rcrP) [Streptomyces sp. WA1-19]
GTGCTCATACGACTTCTGCGGACGTATCTGCGTCCGTACCAGAAACCCATCGCGCTGGTGATGGTGCTCCAACTGCTCCA
GACCTGCGCGGCGCTGTACCTTCCGTCGCTCAACGCGGACATCATCGACCGGGGCGTCGTGCGGGGCGACACGGGCGTCA
TCCTCGGGCTCGGCGCCGTCATGCTGGCGGTGACGCTGGTGCAGACGGCGGGCAACATCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCCGCCCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCACGGGAGCTCAA
CGGCTTCGGGGCGCCGTCCCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACCTTCA
CGCTGATGGTGACGGCGCCCATCATGTGCGTCGGCGGCGTGATCATGGCGCTGGGCCAGGACGTACCGCTCTCCGGGGTG
CTGCTGGCGGTGCTGCCCGTGATGGCGGCCTCGGTCGGCGTGGTCGTCTGGCGGCTGCGGCCGCTCTTCCGCTCGATGCA
GAAGCGGCTGGACACCGTCAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACC
GGTACGAGACCGAGCGGTTCGGCCGGGCCAACACCGACCTGACCGAGGTCTCGCTGGGCACCGGCCGGCTGCTGGCGCTG
ATGTTCCCGCTGGTGATGCTGGTGGTGAACCTGTCCTCGCTGGCCGTGGTCTGGTTCGGTGCCCACCGGATCGACAGCGG
CGCGATGGAGATCGGCGCGCTCACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACGAGCAGCAGCGTCGTCCCG
CCCGCCGAGCCCGTCCGCGAACTGGCCGGCCGGGGCACGCTGGAGATGCGGGCCGCGGGGTTCCGCTACCCGGGCGCGGA
GGAGTGGGTCCTGCGCGACGTGGAGCTGTTCGCCGGGCCCGGCGAGACCACCGCCGTCATCGGCTCGACCGGCTCCGGCA
AGACCACGCTGCTCGGCCTCGCCGCCCGGCTGATCGACCCCGTCGAGGGCGAGGTCCTGGTCGACGGCGTCGACATCCGC
CGGATCGACCCGGCGCTGCTGGCCCGCACCGTCGGCCTCGTCCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTGGCGAG
CAACCTGCGGTACGGCAACCCGGAGGCGAGTGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGAGTTCG
TCGAGCGGCTGGAAGGCGGGCTTCAGGCGCCCGTCTCGCAGGGCGGGACCAACGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCGCGCACCCTGGTGCAGCGGCCCGAGGTCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCCCTGCGCGCGGAGACCGCCGAGGCGGGCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTGGTGGCGGTCGGCCGCCACCACGACCTGATGGAACGGGAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6F145

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.629

100

0.38