Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LH646_RS22875 Genome accession   NZ_CP085039
Coordinates   5260059..5261975 (-) Length   638 a.a.
NCBI ID   WP_175457000.1    Uniprot ID   A0A7Y6F299
Organism   Streptomyces sp. WA1-19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5255059..5266975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS22855 (LH646_22855) - 5255192..5256454 (+) 1263 WP_030696312.1 NAD(P)/FAD-dependent oxidoreductase -
  LH646_RS22860 (LH646_22860) dnaG 5256575..5258479 (+) 1905 WP_030696311.1 DNA primase -
  LH646_RS22865 (LH646_22865) rpoS 5258659..5259732 (+) 1074 WP_030696310.1 RNA polymerase sigma factor Regulator
  LH646_RS22870 (LH646_22870) - 5259752..5260024 (-) 273 WP_217685048.1 hypothetical protein -
  LH646_RS22875 (LH646_22875) rcrQ 5260059..5261975 (-) 1917 WP_175457000.1 ABC transporter ATP-binding protein Regulator
  LH646_RS22880 (LH646_22880) rcrP 5261975..5263708 (-) 1734 WP_047465456.1 ABC transporter ATP-binding protein Regulator
  LH646_RS22885 (LH646_22885) - 5263841..5265295 (-) 1455 WP_226965179.1 xylulokinase -
  LH646_RS22890 (LH646_22890) - 5265400..5265699 (-) 300 WP_030696305.1 hypothetical protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68845.90 Da        Isoelectric Point: 4.9158

>NTDB_id=536472 LH646_RS22875 WP_175457000.1 5260059..5261975(-) (rcrQ) [Streptomyces sp. WA1-19]
MAGPMGAGAPGQQSMDFKGSGKRLLAQFRPEKKVLWAMLATGLVSVALSVTGPKILGWATDLVFAGIVGRDMPAGATREQ
VLAGMRESGDDGVADMLSGMDFTPGQGIDFGAVGEVLLLALGVFLLASALMAVSARLSNRAINHTVFRMRRDVQTKLSRL
PLSYFDQRQRGEVLSRATNDIDNIGQTLQQTMGQVVNSLLTVIGVLVMMFWISPLLALVALVTVPLSFVVATRVGKRSQP
HFVSQWTSTGTLNAHIEEMYTGHSLVKVFGRQDESAERFAEENDALYQASFKAQFTSGIMQPLMMFVSNINYVLVAVVGG
LRVASGALSIGDVQAFIQYSRQFSMPLTQIASMANLVQSGVASAERVFELLDADEQEPDPVPGARLEKPRGRVALEKVSF
RYEPDRPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVEIAAMAREDLRSRIGMVLQDTWLFG
GTIAENIAYGASREVSREEVEEAARAAHADRFIRTLPDGYDTVLDDEGSGVSAGEKQLVTIARAFLSDPVILVLDEATSS
VDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHTELLAAEGAYARLYAAQFAEAAVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=536472 LH646_RS22875 WP_175457000.1 5260059..5261975(-) (rcrQ) [Streptomyces sp. WA1-19]
ATGGCGGGCCCGATGGGCGCGGGAGCGCCGGGACAGCAGTCGATGGACTTCAAGGGTTCGGGAAAGCGGCTGCTGGCCCA
GTTCCGCCCCGAGAAGAAGGTGCTGTGGGCGATGCTCGCCACCGGCCTGGTCAGCGTGGCGCTCTCGGTGACCGGCCCGA
AGATCCTCGGCTGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGCGACATGCCGGCCGGCGCCACCCGCGAGCAG
GTGCTGGCGGGGATGCGCGAGAGCGGCGACGACGGCGTGGCCGACATGCTCTCCGGGATGGACTTCACCCCCGGCCAGGG
CATCGACTTCGGCGCCGTCGGCGAGGTGCTGCTGCTCGCGCTCGGCGTCTTCCTGCTGGCCAGCGCCCTGATGGCGGTCT
CGGCCCGGCTGAGCAACCGCGCGATCAACCACACCGTCTTCCGGATGCGCCGCGACGTGCAGACCAAGCTGTCGCGGCTC
CCGCTCTCCTACTTCGACCAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCAGAC
GCTTCAGCAGACGATGGGCCAGGTGGTCAACTCCCTGCTGACCGTCATCGGGGTGCTGGTGATGATGTTCTGGATATCGC
CGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTCTCCTTCGTGGTCGCCACCCGGGTCGGCAAGCGCTCCCAGCCG
CACTTCGTCAGCCAGTGGACCTCGACGGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAGCCTGGTCAA
GGTCTTCGGCCGCCAGGACGAGTCGGCCGAGCGGTTCGCCGAGGAGAACGACGCGCTCTACCAGGCATCCTTCAAGGCCC
AGTTCACCAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACATCAACTACGTGCTGGTCGCCGTCGTCGGCGGC
CTCCGGGTCGCCTCGGGCGCCCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGATGCCGCT
GACCCAGATCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCG
ACGAGCAGGAGCCCGACCCGGTCCCCGGCGCCCGCCTGGAGAAGCCGCGCGGCCGCGTCGCCCTGGAGAAGGTCTCCTTC
CGCTACGAGCCGGACCGGCCCCTGATCGAGGACCTCTCCCTGACCGTCGAACCGGGCCGCACGGTCGCCATCGTCGGCCC
GACCGGCGCGGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCACCCTGGACG
GCGTCGAGATCGCCGCCATGGCCCGGGAGGACCTGCGCTCCCGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGC
GGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTGAGCCGTGAAGAGGTCGAGGAGGCGGCCCGTGCCGC
CCACGCCGACCGCTTCATCCGCACGCTCCCCGACGGCTACGACACCGTCCTGGACGACGAGGGCAGCGGGGTCAGCGCCG
GAGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTCGTCCTGGACGAGGCCACCAGCTCG
GTGGACACCCGTACCGAGGTGCTGATCCAGCAGGCCATGGCCCGGCTCGCGCACGGCCGGACCTCGTTCGTCATCGCCCA
CCGCCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGGCCATCGTCGAGCAGGGCTCGCACACCG
AACTCCTCGCCGCCGAGGGGGCGTACGCCCGCCTCTACGCGGCCCAGTTCGCCGAGGCGGCCGTCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(410-559)

ABC transporter transmembrane region (ABC_membrane)

(111-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6F299

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.774

97.179

0.406