Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LH646_RS20690 Genome accession   NZ_CP085039
Coordinates   4767352..4769499 (-) Length   715 a.a.
NCBI ID   WP_047141984.1    Uniprot ID   A0ABY3GXS3
Organism   Streptomyces sp. WA1-19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4762352..4774499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS20670 (LH646_20670) aroQ 4762699..4763172 (-) 474 WP_030695135.1 type II 3-dehydroquinate dehydratase -
  LH646_RS20675 (LH646_20675) - 4763280..4764293 (-) 1014 WP_030695136.1 TerC family protein -
  LH646_RS20680 (LH646_20680) - 4764573..4766435 (-) 1863 WP_175458298.1 TerD family protein -
  LH646_RS20685 (LH646_20685) - 4766635..4767213 (-) 579 WP_047141985.1 TerD family protein -
  LH646_RS20690 (LH646_20690) uvrB 4767352..4769499 (-) 2148 WP_047141984.1 excinuclease ABC subunit UvrB Machinery gene
  LH646_RS20695 (LH646_20695) - 4769539..4770474 (-) 936 WP_030695140.1 MHYT domain-containing protein -
  LH646_RS20700 (LH646_20700) - 4770846..4771787 (+) 942 WP_047469063.1 glycerophosphodiester phosphodiesterase -
  LH646_RS20705 (LH646_20705) - 4771822..4772382 (+) 561 WP_030695142.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LH646_RS20710 (LH646_20710) - 4772432..4773808 (+) 1377 WP_175458299.1 MFS transporter -
  LH646_RS20715 (LH646_20715) - 4773754..4774251 (-) 498 WP_030695144.1 VOC family protein -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80342.07 Da        Isoelectric Point: 4.8570

>NTDB_id=536466 LH646_RS20690 WP_047141984.1 4767352..4769499(-) (uvrB) [Streptomyces sp. WA1-19]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIADLDRRVRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDALLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIETLTTLHPLTG
EIISDEQQLYVFPASHYVAGPERMERAVNDIEQELGERLTVLEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGIENYSMH
FDGREPGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGNYELSRSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIDETNRRREKQIAYNTENGIDPQPLRKKINDIVATIAREDVDTEALLGTGYRQTKDGKAKAPVPDLGGG
YEAPKAAKGGKKAAKKAAGTPTDRPAAELAGQIEEMTNRMRAAAADLQFEVAARLRDEVGEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=536466 LH646_RS20690 WP_047141984.1 4767352..4769499(-) (uvrB) [Streptomyces sp. WA1-19]
ATGCGGCCTGTATCGAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
CGCAGCCATCGCCGACCTGGACCGCCGGGTCCGCGCCGGTGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGAACCGGCA
AGTCCGCCACCACGGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCTCCCAACAAGACCCTCGCCGCC
CAGCTCGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGTTGCGCCACT
CCGCGACCAACTCCCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTGGGCACGCCG
CAGGAGTACGTCGACCGGATGGTCCCCCTCAAGGTCGGCGAGGAGATCGACCGCGACGCCCTGCTGCGCCGCTTCGTCGA
GATCCAGTACACCCGCAACGACCTCGCCTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGACGCTCACCACGCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGAGCAGCAGCTCTACGTCTTCCCCGCCTCGCACTACGTCGCGGGCCCCGAGCGCATGGAGCGCGC
GGTCAACGACATCGAGCAGGAGCTGGGCGAGCGGCTCACCGTCCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCCGGCACCCCACCGCACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTGGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCGATGCACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTCCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGGGTCGGCCAGACGGTCTACCTC
TCGGCGACCCCGGGCAACTACGAGCTCTCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACCCGCACCGAGAAGGACG
AGCGGGTCCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTCCTGCGCGAGCTGCGCGCCGGGGAGTACGACGTCCT
GGTCGGCATCAACCTCCTCCGCGAGGGGCTCGACCTGCCGGAGGTCTCCCTGGTCGCCATCCTCGACGCCGACAAGGAGG
GGTTCCTGCGCTCGGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCCAGGTCCACATGTAC
GCGGACCGGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGAACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGACGTCGACA
CCGAGGCCCTGCTCGGCACCGGCTACCGCCAGACGAAGGACGGCAAGGCCAAGGCCCCCGTCCCGGACCTCGGCGGCGGG
TACGAGGCCCCGAAGGCGGCCAAGGGCGGCAAGAAGGCGGCCAAGAAGGCCGCCGGCACGCCCACCGACCGCCCGGCGGC
CGAGCTGGCCGGGCAGATCGAGGAGATGACCAACCGGATGCGGGCCGCCGCCGCCGATCTCCAGTTCGAGGTCGCCGCCC
GGCTGCGCGACGAGGTGGGCGAGATGAAGAAGGAGCTGCGGCAGATGAAGGAGGCCGGCCTCGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(672-704)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

62.029

85.455

0.53
  uvrB Streptococcus pneumoniae R6

62.029

85.455

0.53
  uvrB Streptococcus pneumoniae D39

62.029

85.455

0.53