Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CURI_RS13710 Genome accession   NC_018664
Coordinates   2889754..2890461 (-) Length   235 a.a.
NCBI ID   WP_014968872.1    Uniprot ID   K0B144
Organism   Gottschalkia acidurici 9a     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884754..2895461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CURI_RS13680 (Curi_c27390) - 2885124..2885495 (-) 372 WP_014968866.1 YbaN family protein -
  CURI_RS13685 (Curi_c27400) - 2885542..2886198 (-) 657 WP_014968867.1 YczE/YyaS/YitT family protein -
  CURI_RS13690 (Curi_c27410) - 2886210..2886617 (-) 408 WP_014968868.1 MarR family winged helix-turn-helix transcriptional regulator -
  CURI_RS13695 (Curi_c27420) - 2886820..2887476 (+) 657 WP_014968869.1 Pr6Pr family membrane protein -
  CURI_RS13700 (Curi_c27430) - 2887556..2888209 (-) 654 WP_014968870.1 hypothetical protein -
  CURI_RS13705 (Curi_c27440) - 2888383..2889753 (-) 1371 WP_014968871.1 sensor histidine kinase -
  CURI_RS13710 (Curi_c27450) scnR 2889754..2890461 (-) 708 WP_014968872.1 response regulator transcription factor Regulator
  CURI_RS13715 (Curi_c27460) - 2890614..2891525 (+) 912 WP_014968873.1 ABC transporter ATP-binding protein -
  CURI_RS13720 (Curi_c27470) - 2891525..2891845 (+) 321 WP_014968874.1 ABC transporter permease -
  CURI_RS13725 (Curi_c27480) - 2891847..2892272 (+) 426 WP_014968875.1 ABC transporter permease -
  CURI_RS13730 (Curi_c27490) - 2892284..2893027 (+) 744 WP_014968876.1 ABC transporter permease -
  CURI_RS13735 (Curi_c27500) - 2893187..2893915 (-) 729 WP_014968877.1 amidohydrolase family protein -
  CURI_RS13740 (Curi_c27510) - 2893919..2894434 (-) 516 WP_014968878.1 ECF transporter S component -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27102.56 Da        Isoelectric Point: 5.4573

>NTDB_id=53624 CURI_RS13710 WP_014968872.1 2889754..2890461(-) (scnR) [Gottschalkia acidurici 9a]
MGRLYKERKILIVDDEKELLEMVKDILLQEGYTNIVTASTVKEAIIQFEHSKPHLAILDVMLPDGEGYEICRYIRSKSDI
PILFLTAKDEDEDLYKGLELGGDDYIIKPFLPKELLLRIIAILRRSYKEDEKSIVPIAGGIINFGKAQSIINGKVFPLTA
KEHEILQILYRNKNYIVTIDNICQYIWGENYFGYENSLMAHIRRIREKIEVNPSSPVNLVTIKGLGYKLIIREDD

Nucleotide


Download         Length: 708 bp        

>NTDB_id=53624 CURI_RS13710 WP_014968872.1 2889754..2890461(-) (scnR) [Gottschalkia acidurici 9a]
ATGGGAAGACTATATAAAGAAAGAAAAATACTTATAGTAGATGATGAAAAGGAATTGCTGGAAATGGTAAAAGATATCTT
ATTGCAAGAAGGATATACGAATATAGTTACAGCAAGTACGGTTAAAGAAGCTATTATACAGTTTGAACATTCAAAACCTC
ATTTAGCAATTTTAGATGTCATGTTACCAGATGGAGAAGGGTATGAAATATGTAGATATATTCGTAGTAAGTCCGACATT
CCAATTCTTTTCCTGACTGCGAAGGATGAAGATGAAGATTTATATAAAGGATTGGAACTTGGTGGAGATGATTATATTAT
AAAGCCATTTTTACCTAAAGAATTACTTCTAAGAATTATAGCTATACTAAGAAGATCATACAAAGAGGATGAAAAGTCCA
TTGTTCCTATAGCAGGTGGAATTATAAATTTTGGAAAAGCGCAATCTATAATTAATGGTAAAGTATTTCCACTTACTGCA
AAGGAACATGAGATATTACAGATTCTTTATCGAAATAAAAACTATATTGTAACGATTGATAATATATGTCAATATATTTG
GGGAGAAAATTACTTTGGATATGAAAATTCTTTGATGGCACATATAAGAAGAATAAGGGAAAAGATAGAAGTGAATCCAT
CTTCACCCGTGAATCTTGTTACTATAAAAGGTCTTGGATACAAACTAATTATAAGGGAAGATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-119)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0B144

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

53.304

96.596

0.515
  micA Streptococcus pneumoniae Cp1015

39.912

97.021

0.387
  vicR Streptococcus mutans UA159

38.865

97.447

0.379

Multiple sequence alignment