Detailed information NTG0535812

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I6K03_RS08100
• Genome accession: NZ_CP069587
• Coordinates: 1657191..1658504 (+)
• Length: 437 a.a.
• NCBI ID: WP_081526168.1
• Uniprot ID: -
• Organism: Chromobacterium violaceum strain FDAARGOS_1273
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1652191..1663504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K03_RS08085 (I6K03_08085)	-	1652734..1653192 (-)	459	WP_043613280.1	GNAT family N-acetyltransferase	-
I6K03_RS08090 (I6K03_08090)	parC	1653291..1655642 (+)	2352	WP_081526169.1	DNA topoisomerase IV subunit A	-
I6K03_RS08095 (I6K03_08095)	-	1655642..1657198 (+)	1557	WP_045051037.1	two-component system sensor histidine kinase NtrB	-
I6K03_RS08100 (I6K03_08100)	pilR	1657191..1658504 (+)	1314	WP_081526168.1	sigma-54-dependent transcriptional regulator	Regulator
I6K03_RS08105 (I6K03_08105)	-	1658556..1659941 (-)	1386	WP_011133627.1	radical SAM/SPASM domain-containing protein	-
I6K03_RS08110 (I6K03_08110)	-	1660044..1660220 (-)	177	WP_157760154.1	hypothetical protein	-
I6K03_RS08115 (I6K03_08115)	-	1660736..1661986 (+)	1251	WP_081526167.1	HlyD family secretion protein	-

Sequence

Protein

• Length: 437 a.a.
• Molecular weight: 47746.83 Da
• Isoelectric Point: 5.6281

>NTDB_id=535812 I6K03_RS08100 WP_081526168.1 1657191..1658504(+) (pilR) [Chromobacterium violaceum strain FDAARGOS_1273]
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPVCAGSVAEARSALDAGGFDLALTDMRLPDGEGLEVVNHIGESGLDVPIA
VITAYGSADNAVRAMKAGAFDYLQKPVSLAQLRSLVKTALKVETPVRAAVQQRLLGESPAIQEVLRLMDKLSRSQAAVYI
GGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPESLMESEFFGCRKGAFTGADADRDGFFQQAQGGTLFLDEVAELPL
AMQVKLLRAIQEKTVRKLGASQEEAVDARIICATHRDLAARVESGLFRQDLYYRLNVLPLRMPPLRELRDDIPLFAERLL
QRFGGASAPQLSADARRALQDYAYPGNFRELENILERAVALAAGPALSREDLQLTPCAEHAPEPGSGEPLQDYLDRVERE
AIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

Nucleotide

• Length: 1314 bp

>NTDB_id=535812 I6K03_RS08100 WP_081526168.1 1657191..1658504(+) (pilR) [Chromobacterium violaceum strain FDAARGOS_1273]
ATGACTAAGACACTGCGCGTATTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCTTGCTGAAAAT
GGGCCTCGCCCCGGTATGCGCCGGCAGCGTGGCCGAGGCGCGTTCCGCGCTGGACGCGGGCGGATTCGACCTGGCGCTGA
CCGATATGCGGCTGCCTGACGGCGAGGGCTTGGAGGTGGTCAACCACATCGGCGAGTCCGGGCTGGATGTGCCCATCGCC
GTGATCACCGCCTACGGCAGCGCCGACAACGCGGTGCGGGCGATGAAGGCCGGCGCTTTCGACTACTTGCAGAAGCCGGT
CAGCCTGGCCCAGCTGCGCAGCCTGGTGAAGACGGCGCTGAAGGTGGAAACGCCGGTCCGCGCCGCCGTCCAGCAGCGGC
TGCTGGGCGAGTCGCCGGCGATACAGGAAGTGCTGCGGCTGATGGACAAGCTGTCGCGCAGCCAGGCCGCGGTGTACATC
GGCGGGGAGTCCGGCACCGGCAAGGAACAGGCTGCGCGGCTGATCCACGAACTGGGTCCGCGCGCCGACAAGCCCTTCGT
CGCCGTCAACTGCGGCGCGATCCCGGAAAGCCTGATGGAGAGCGAGTTCTTCGGCTGCCGCAAGGGCGCGTTCACCGGCG
CGGACGCCGACCGCGACGGCTTCTTCCAGCAGGCGCAGGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAGCTGCCACTG
GCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGACCGTGCGCAAGCTGGGTGCCAGCCAGGAAGAGGCGGTCGA
TGCCCGCATCATCTGCGCCACCCACCGCGATCTGGCGGCGCGGGTGGAGTCCGGGCTGTTCCGCCAGGACCTGTACTACC
GCCTCAACGTGCTGCCGCTGAGAATGCCGCCGCTGCGCGAGCTGCGCGACGACATTCCGTTGTTCGCAGAGCGGCTGCTG
CAGCGCTTCGGCGGCGCGTCCGCGCCGCAGTTGTCCGCCGACGCCCGCCGCGCGCTGCAGGACTACGCCTACCCCGGCAA
TTTCCGCGAGCTGGAGAACATCCTGGAGCGGGCGGTGGCGCTGGCCGCCGGGCCCGCGCTGTCGCGCGAAGACCTGCAGC
TGACGCCCTGCGCCGAGCACGCGCCGGAGCCCGGCAGCGGCGAGCCGCTGCAGGACTACCTGGACCGAGTCGAGCGCGAG
GCCATCGTCAAGGCGCTGGAGGGCACCCGCTACAACCGCACCCAGGCCGCTAAGAAACTGGGGGTCACCTTCCGCTCGCT
GCGTTACCGGATGGAGCGGCTGGGCGTGAAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (394-433)

• Sigma-54 interaction domain (Sigma54_activat) (134-300)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.318	100	0.597
pilR	Acinetobacter baumannii strain A118	44.978	100	0.471
luxO	Vibrio cholerae strain A1552	39.952	95.652	0.382