Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6J46_RS07505 Genome accession   NZ_CP069586
Coordinates   1584348..1584752 (+) Length   134 a.a.
NCBI ID   WP_204085851.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579348..1589752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS07490 (I6J46_07490) relA 1580334..1582640 (+) 2307 WP_002117181.1 RelA/SpoT family protein -
  I6J46_RS07495 (I6J46_07495) - 1582687..1583460 (-) 774 WP_017399923.1 SDR family oxidoreductase -
  I6J46_RS07500 (I6J46_07500) mazG 1583573..1584379 (+) 807 WP_044099460.1 nucleoside triphosphate pyrophosphohydrolase -
  I6J46_RS07505 (I6J46_07505) comEA 1584348..1584752 (+) 405 WP_204085851.1 ComEA family DNA-binding protein Machinery gene
  I6J46_RS07510 (I6J46_07510) pcnB 1584878..1586341 (+) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  I6J46_RS07515 (I6J46_07515) folK 1586338..1586820 (+) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6J46_RS07520 (I6J46_07520) panB 1586866..1587675 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6J46_RS07525 (I6J46_07525) panC 1587679..1588527 (+) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  I6J46_RS07530 (I6J46_07530) rapZ 1588551..1589402 (+) 852 WP_005066272.1 RNase adapter RapZ -
  I6J46_RS07535 (I6J46_07535) - 1589399..1589668 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15358.61 Da        Isoelectric Point: 10.4871

>NTDB_id=535789 I6J46_RS07505 WP_204085851.1 1584348..1584752(+) (comEA) [Acinetobacter pittii strain FDAARGOS_1216]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSIQHASHSSVPKSSAMTDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=535789 I6J46_RS07505 WP_204085851.1 1584348..1584752(+) (comEA) [Acinetobacter pittii strain FDAARGOS_1216]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAACAGCAGATGTATGATCAGAAGTTGAGCATAC
AACACGCTTCTCATTCTAGTGTTCCAAAAAGCTCAGCCATGACTGACTCTTCGGGACAAGTTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAAGCAATTGTGGAATATCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGCCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.883

100

0.694
  comEA Acinetobacter baumannii D1279779

67.883

100

0.694
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403