Detailed information NTG0535781

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6J46_RS06260
• Genome accession: NZ_CP069586
• Coordinates: 1312382..1313242 (-)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS_1216
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1307382..1318242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J46_RS06235 (I6J46_06235)	-	1308272..1309582 (+)	1311	WP_204085777.1	tetratricopeptide repeat protein	-
I6J46_RS06240 (I6J46_06240)	-	1309659..1309985 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6J46_RS06245 (I6J46_06245)	rlmB	1310088..1310837 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6J46_RS06250 (I6J46_06250)	-	1310873..1311787 (+)	915	WP_039763523.1	DMT family transporter	-
I6J46_RS06255 (I6J46_06255)	coaE	1311784..1312380 (-)	597	WP_039763520.1	dephospho-CoA kinase	-
I6J46_RS06260 (I6J46_06260)	pilD	1312382..1313242 (-)	861	WP_002114758.1	prepilin peptidase	Machinery gene
I6J46_RS06265 (I6J46_06265)	pilC	1313242..1314468 (-)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
I6J46_RS06270 (I6J46_06270)	pilB	1314496..1316208 (-)	1713	WP_204085778.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6J46_RS06275 (I6J46_06275)	tpiA	1316500..1317294 (+)	795	WP_016142374.1	triose-phosphate isomerase	-
I6J46_RS06280 (I6J46_06280)	secG	1317307..1317636 (+)	330	WP_016142373.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=535781 I6J46_RS06260 WP_002114758.1 1312382..1313242(-) (pilD) [Acinetobacter pittii strain FDAARGOS_1216]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=535781 I6J46_RS06260 WP_002114758.1 1312382..1313242(-) (pilD) [Acinetobacter pittii strain FDAARGOS_1216]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCATTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437