Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6J46_RS02850 Genome accession   NZ_CP069586
Coordinates   604225..604707 (-) Length   160 a.a.
NCBI ID   WP_017400484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599225..609707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02815 (I6J46_02815) - 599310..600341 (+) 1032 WP_204085544.1 lipase secretion chaperone -
  I6J46_RS02820 (I6J46_02820) lip 600457..601398 (+) 942 WP_204085999.1 lipase family alpha/beta hydrolase -
  I6J46_RS02825 (I6J46_02825) rplS 601450..601818 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6J46_RS02830 (I6J46_02830) trmD 602038..602793 (-) 756 WP_032004868.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6J46_RS02835 (I6J46_02835) rimM 602836..603384 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6J46_RS02840 (I6J46_02840) rpsP 603404..603655 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6J46_RS02845 (I6J46_02845) pilE 603803..604228 (-) 426 WP_204085545.1 type IV pilin protein Machinery gene
  I6J46_RS02850 (I6J46_02850) pilY2 604225..604707 (-) 483 WP_017400484.1 type IV pilin protein Machinery gene
  I6J46_RS02855 (I6J46_02855) pilY1 604718..608572 (-) 3855 WP_204085546.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J46_RS02860 (I6J46_02860) pilX 608584..609393 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17505.79 Da        Isoelectric Point: 8.4721

>NTDB_id=535759 I6J46_RS02850 WP_017400484.1 604225..604707(-) (pilY2) [Acinetobacter pittii strain FDAARGOS_1216]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=535759 I6J46_RS02850 WP_017400484.1 604225..604707(-) (pilY2) [Acinetobacter pittii strain FDAARGOS_1216]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTAACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

41.279

100

0.444