Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LB315_RS10110 Genome accession   NZ_CP084892
Coordinates   2023661..2024479 (-) Length   272 a.a.
NCBI ID   WP_229373830.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018661..2029479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS10090 (LB315_10100) - 2019754..2020731 (+) 978 WP_229373829.1 metal-dependent hydrolase -
  LB315_RS10095 (LB315_10105) - 2020992..2021828 (-) 837 WP_000886457.1 membrane protein -
  LB315_RS10100 (LB315_10110) - 2021837..2023354 (-) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  LB315_RS10105 (LB315_10115) - 2023369..2023683 (-) 315 WP_000435806.1 YfhH family protein -
  LB315_RS10110 (LB315_10120) recX 2023661..2024479 (-) 819 WP_229373830.1 recombination regulator RecX Regulator
  LB315_RS10115 (LB315_10125) sgtB 2024740..2025549 (-) 810 WP_000830380.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  LB315_RS10120 (LB315_10130) - 2025889..2026404 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  LB315_RS10125 (LB315_10135) - 2026534..2026695 (-) 162 WP_001005407.1 SE1561 family protein -
  LB315_RS10130 (LB315_10140) yfkAB 2026919..2028070 (+) 1152 WP_001089602.1 radical SAM/CxCxxxxC motif protein YfkAB -
  LB315_RS10135 (LB315_10145) - 2028330..2028860 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32259.14 Da        Isoelectric Point: 6.3191

>NTDB_id=535758 LB315_RS10110 WP_229373830.1 2023661..2024479(-) (recX) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MPKITKIEVQKKNKERFNLFLDEKFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=535758 LB315_RS10110 WP_229373830.1 2023661..2024479(-) (recX) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGATGAAAAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGATATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAATAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTGTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993