Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J35_RS11050 Genome accession   NZ_CP069567
Coordinates   2197852..2198373 (-) Length   173 a.a.
NCBI ID   WP_047132291.1    Uniprot ID   -
Organism   Staphylococcus condimenti strain FDAARGOS_1205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2192852..2203373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J35_RS11025 (I6J35_11025) - 2194010..2195479 (-) 1470 WP_047132287.1 ABC transporter ATP-binding protein -
  I6J35_RS11030 (I6J35_11030) - 2195492..2196187 (-) 696 WP_047132288.1 energy-coupling factor transporter transmembrane component T -
  I6J35_RS11035 (I6J35_11035) - 2196187..2196771 (-) 585 WP_047132289.1 MptD family putative ECF transporter S component -
  I6J35_RS11040 (I6J35_11040) - 2197002..2197220 (-) 219 WP_047132290.1 hypothetical protein -
  I6J35_RS11045 (I6J35_11045) rpsR 2197553..2197795 (-) 243 WP_012664058.1 30S ribosomal protein S18 -
  I6J35_RS11050 (I6J35_11050) ssbA 2197852..2198373 (-) 522 WP_047132291.1 single-stranded DNA-binding protein Machinery gene
  I6J35_RS11055 (I6J35_11055) rpsF 2198396..2198692 (-) 297 WP_047132292.1 30S ribosomal protein S6 -
  I6J35_RS11060 (I6J35_11060) - 2198838..2199875 (-) 1038 WP_052766760.1 thermonuclease family protein -
  I6J35_RS11065 (I6J35_11065) - 2200033..2200290 (+) 258 WP_047132293.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  I6J35_RS11070 (I6J35_11070) - 2200284..2200622 (+) 339 WP_047132294.1 type II toxin-antitoxin system PemK/MazF family toxin -
  I6J35_RS11075 (I6J35_11075) argF 2200875..2201879 (+) 1005 WP_063164631.1 ornithine carbamoyltransferase -
  I6J35_RS11080 (I6J35_11080) - 2202080..2202847 (+) 768 WP_047131968.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19174.84 Da        Isoelectric Point: 5.2149

>NTDB_id=535655 I6J35_RS11050 WP_047132291.1 2197852..2198373(-) (ssbA) [Staphylococcus condimenti strain FDAARGOS_1205]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGGQQSGGGNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQFDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=535655 I6J35_RS11050 WP_047132291.1 2197852..2198373(-) (ssbA) [Staphylococcus condimenti strain FDAARGOS_1205]
ATGCTTAACAGAGTTGTATTGGTAGGACGTTTAACTCGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAACAATTATTTGTTTAAAGGCAGTCTAGCTGGCGTTGACGGTCGCTTGCAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTGTGTGACAGCGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATGGCGGCCAACAATCTGGAGGAGGCAATCAATTCCAAGATTACGGTCAAAGTTACGGTGGACAAC
AACAAGGTCAAAATACGTCATCTTATCAAAACCAAAATTCATCAAAATCTGGACAATTTGATAATCCATTTGCAAATGCA
AACGGACCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.584

0.364