Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6J44_RS01065 Genome accession   NZ_CP069537
Coordinates   195468..195941 (-) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190468..200941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01050 (I6J44_01050) pilX 193108..193947 (-) 840 WP_204086186.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J44_RS01055 (I6J44_01055) pilW 193913..194914 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6J44_RS01060 (I6J44_01060) pilV 194914..195474 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6J44_RS01065 (I6J44_01065) fimU 195468..195941 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6J44_RS01070 (I6J44_01070) ispH 196111..197061 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J44_RS01075 (I6J44_01075) gmk 197184..197813 (+) 630 WP_002116973.1 guanylate kinase -
  I6J44_RS01080 (I6J44_01080) rpoZ 197886..198164 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J44_RS01085 (I6J44_01085) - 198203..198358 (+) 156 Protein_202 hypothetical protein -
  I6J44_RS01090 (I6J44_01090) spoT 198374..200479 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=535412 I6J44_RS01065 WP_016802756.1 195468..195941(-) (fimU) [Acinetobacter pittii strain FDAARGOS_1214]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=535412 I6J44_RS01065 WP_016802756.1 195468..195941(-) (fimU) [Acinetobacter pittii strain FDAARGOS_1214]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879