Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   I6J44_RS01055 Genome accession   NZ_CP069537
Coordinates   193913..194914 (-) Length   333 a.a.
NCBI ID   WP_002116811.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188913..199914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J44_RS01045 (I6J44_01045) pilY1 189242..193096 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J44_RS01050 (I6J44_01050) pilX 193108..193947 (-) 840 WP_204086186.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J44_RS01055 (I6J44_01055) pilW 193913..194914 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  I6J44_RS01060 (I6J44_01060) pilV 194914..195474 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  I6J44_RS01065 (I6J44_01065) fimU 195468..195941 (-) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  I6J44_RS01070 (I6J44_01070) ispH 196111..197061 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J44_RS01075 (I6J44_01075) gmk 197184..197813 (+) 630 WP_002116973.1 guanylate kinase -
  I6J44_RS01080 (I6J44_01080) rpoZ 197886..198164 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J44_RS01085 (I6J44_01085) - 198203..198358 (+) 156 Protein_202 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35802.50 Da        Isoelectric Point: 6.6395

>NTDB_id=535410 I6J44_RS01055 WP_002116811.1 193913..194914(-) (pilW) [Acinetobacter pittii strain FDAARGOS_1214]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=535410 I6J44_RS01055 WP_002116811.1 193913..194914(-) (pilW) [Acinetobacter pittii strain FDAARGOS_1214]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85